miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11538 3' -52.3 NC_003085.1 + 786 0.66 0.785666
Target:  5'- gAGGCGCGGGUGgacCUGCucaggcCGCGCCcgaggccggACGCg -3'
miRNA:   3'- -UUUGUGCCUAU---GACGu-----GCGUGG---------UGUG- -5'
11538 3' -52.3 NC_003085.1 + 1652 0.72 0.462467
Target:  5'- cGGCACGcGUAC-GC-CGCGCCGCACu -3'
miRNA:   3'- uUUGUGCcUAUGaCGuGCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 3063 0.68 0.675635
Target:  5'- cAGCGgGGAgcgguucccACUGCGCGCucgacgaaaccACCGCGCg -3'
miRNA:   3'- uUUGUgCCUa--------UGACGUGCG-----------UGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 3409 0.7 0.572248
Target:  5'- gAAGgGCGGGUGCaGC-CGUAUCGCGCc -3'
miRNA:   3'- -UUUgUGCCUAUGaCGuGCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 3694 0.68 0.664171
Target:  5'- --gUugGGAUGCgGCcacgcagcgcgACGUGCCACGCg -3'
miRNA:   3'- uuuGugCCUAUGaCG-----------UGCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 4147 0.68 0.709706
Target:  5'- --cUACGGAgcgACUGCugGCGCaacucCGCg -3'
miRNA:   3'- uuuGUGCCUa--UGACGugCGUGgu---GUG- -5'
11538 3' -52.3 NC_003085.1 + 4949 0.75 0.321566
Target:  5'- ---gGCGGGUGCUggGCAC-CACCGCGCa -3'
miRNA:   3'- uuugUGCCUAUGA--CGUGcGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 5851 0.73 0.411832
Target:  5'- --cCACGGcGUAgaGCACGCGCCGCuCa -3'
miRNA:   3'- uuuGUGCC-UAUgaCGUGCGUGGUGuG- -5'
11538 3' -52.3 NC_003085.1 + 6015 0.69 0.652674
Target:  5'- uGGGCGCGGA---UGUACGCccggacGCCGCGCc -3'
miRNA:   3'- -UUUGUGCCUaugACGUGCG------UGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 7342 0.67 0.764644
Target:  5'- aGGACGCGG--GCUaCACGCGCCccuggGCGCc -3'
miRNA:   3'- -UUUGUGCCuaUGAcGUGCGUGG-----UGUG- -5'
11538 3' -52.3 NC_003085.1 + 8126 0.67 0.743025
Target:  5'- uGAugACGuGGUGgacCUGCucaaGCGCCGCGCa -3'
miRNA:   3'- -UUugUGC-CUAU---GACGug--CGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 9192 0.66 0.815856
Target:  5'- cGGCGCGGGUACuccUGCGCccuguguuCGCCGCGg -3'
miRNA:   3'- uUUGUGCCUAUG---ACGUGc-------GUGGUGUg -5'
11538 3' -52.3 NC_003085.1 + 10569 0.67 0.764644
Target:  5'- --cCGCGGAUuCUcCAgUGCGCCGCGCa -3'
miRNA:   3'- uuuGUGCCUAuGAcGU-GCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 11481 1.08 0.001513
Target:  5'- gAAACACGGAUACUGCACGCACCACACg -3'
miRNA:   3'- -UUUGUGCCUAUGACGUGCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 11595 0.66 0.805988
Target:  5'- cGAACGCGcg-GCcgGUAacCGCACCACACc -3'
miRNA:   3'- -UUUGUGCcuaUGa-CGU--GCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 11758 0.66 0.795921
Target:  5'- uGACACGcgucuacgacGGUACgGCG-GCGCCGCGCu -3'
miRNA:   3'- uUUGUGC----------CUAUGaCGUgCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 12277 0.69 0.641156
Target:  5'- -uGCAUGGA-ACUcGCACGCgACgGCGCg -3'
miRNA:   3'- uuUGUGCCUaUGA-CGUGCG-UGgUGUG- -5'
11538 3' -52.3 NC_003085.1 + 12335 0.7 0.583656
Target:  5'- cGAACcUGGGcaaggGCACGCGCCACAUg -3'
miRNA:   3'- -UUUGuGCCUauga-CGUGCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 12830 0.71 0.482552
Target:  5'- ---gGCGGAUgcGCUGUugGCcgccaauGCCACGCa -3'
miRNA:   3'- uuugUGCCUA--UGACGugCG-------UGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 14267 0.66 0.775236
Target:  5'- gAGACguGCGGccagGCUGCugccgucaaGCGCCGCGCa -3'
miRNA:   3'- -UUUG--UGCCua--UGACGug-------CGUGGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.