miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11539 5' -63 NC_003085.1 + 12537 1.09 0.000154
Target:  5'- uCGCGGCAGAGGGAUGCCACCCGCCGCc -3'
miRNA:   3'- -GCGCCGUCUCCCUACGGUGGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 16025 0.79 0.034808
Target:  5'- aGCGGcCAGAGGGAgcGCCACCaGCCGa -3'
miRNA:   3'- gCGCC-GUCUCCCUa-CGGUGGgCGGCg -5'
11539 5' -63 NC_003085.1 + 12767 0.77 0.050089
Target:  5'- gGUGGCcuGGGGuGAUGCC-CCUGCCGCc -3'
miRNA:   3'- gCGCCGu-CUCC-CUACGGuGGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 44347 0.76 0.060345
Target:  5'- aCGCGGgAGAGGGcgGCCAauCCCGCgucaacgucacuguCGCu -3'
miRNA:   3'- -GCGCCgUCUCCCuaCGGU--GGGCG--------------GCG- -5'
11539 5' -63 NC_003085.1 + 6771 0.75 0.067969
Target:  5'- uGCGGUgcAGGGcgGCCGCaaGCCGCu -3'
miRNA:   3'- gCGCCGucUCCCuaCGGUGggCGGCG- -5'
11539 5' -63 NC_003085.1 + 46889 0.74 0.089445
Target:  5'- gGCGGC-GAGGuGAUGCCGCCCaaggacgugGCCa- -3'
miRNA:   3'- gCGCCGuCUCC-CUACGGUGGG---------CGGcg -5'
11539 5' -63 NC_003085.1 + 42828 0.73 0.105281
Target:  5'- aCGCGGC-GAuGGAUGCCGUCCaCCGCg -3'
miRNA:   3'- -GCGCCGuCUcCCUACGGUGGGcGGCG- -5'
11539 5' -63 NC_003085.1 + 22339 0.73 0.110823
Target:  5'- cCGCaGGCcaggaauGGAGGGAUGCCGugaggCGCCGCu -3'
miRNA:   3'- -GCG-CCG-------UCUCCCUACGGUgg---GCGGCG- -5'
11539 5' -63 NC_003085.1 + 11513 0.72 0.120455
Target:  5'- uGCGGguGuGGuGcgGUUACCgGCCGCg -3'
miRNA:   3'- gCGCCguCuCC-CuaCGGUGGgCGGCG- -5'
11539 5' -63 NC_003085.1 + 9487 0.72 0.130513
Target:  5'- uCGUGGUAGGGaaaGAUGCuCGCCUuuaGCCGCg -3'
miRNA:   3'- -GCGCCGUCUCc--CUACG-GUGGG---CGGCG- -5'
11539 5' -63 NC_003085.1 + 27617 0.71 0.133679
Target:  5'- gCGCGGUguguggagccuGGGGGGcucGCCGCCagcgggaCGCCGCa -3'
miRNA:   3'- -GCGCCG-----------UCUCCCua-CGGUGG-------GCGGCG- -5'
11539 5' -63 NC_003085.1 + 20432 0.71 0.134035
Target:  5'- aCGCuGGCAgGAGGaGAUGuCCGCCgcgcgcgaGCCGCu -3'
miRNA:   3'- -GCG-CCGU-CUCC-CUAC-GGUGGg-------CGGCG- -5'
11539 5' -63 NC_003085.1 + 3957 0.71 0.137643
Target:  5'- uCGCGGCccGGGGAUggaGCCAgaCgGCCGCg -3'
miRNA:   3'- -GCGCCGucUCCCUA---CGGUg-GgCGGCG- -5'
11539 5' -63 NC_003085.1 + 25350 0.71 0.14513
Target:  5'- uCGCGGUgagguAGAcGGGcgcGCCgacgacgacGCCCGCCGCg -3'
miRNA:   3'- -GCGCCG-----UCU-CCCua-CGG---------UGGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 31188 0.71 0.14513
Target:  5'- gGCGcGCuGcucGGGGUugaGCCGCUCGCCGCu -3'
miRNA:   3'- gCGC-CGuCu--CCCUA---CGGUGGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 19889 0.71 0.14513
Target:  5'- uGCGGUAGuGGucgacGAUGuCCACgCCGCCGg -3'
miRNA:   3'- gCGCCGUCuCC-----CUAC-GGUG-GGCGGCg -5'
11539 5' -63 NC_003085.1 + 18083 0.71 0.149011
Target:  5'- aGCGGCAGuGGGAguugGCCuggaAgCgGCUGCg -3'
miRNA:   3'- gCGCCGUCuCCCUa---CGG----UgGgCGGCG- -5'
11539 5' -63 NC_003085.1 + 17830 0.71 0.149011
Target:  5'- uGCGGCAGgccccuGGGGcaGUGCUgguGCCCGCagGCg -3'
miRNA:   3'- gCGCCGUC------UCCC--UACGG---UGGGCGg-CG- -5'
11539 5' -63 NC_003085.1 + 28318 0.71 0.152986
Target:  5'- gCGCGGUgggacgggcgugGGAGuGGAUuuggcuaucGCCAUCCGCgGCa -3'
miRNA:   3'- -GCGCCG------------UCUC-CCUA---------CGGUGGGCGgCG- -5'
11539 5' -63 NC_003085.1 + 12842 0.7 0.155418
Target:  5'- gGCGGCAGGGGcaucaccccagGCCACCuCGacaCGCa -3'
miRNA:   3'- gCGCCGUCUCCcua--------CGGUGG-GCg--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.