miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11539 5' -63 NC_003085.1 + 43434 0.69 0.208669
Target:  5'- uCGCGucGUcguGAGGGGUGCCGCgCUGCUGa -3'
miRNA:   3'- -GCGC--CGu--CUCCCUACGGUG-GGCGGCg -5'
11539 5' -63 NC_003085.1 + 15269 0.7 0.174337
Target:  5'- cCGCGGCcGAGc----UCACCCGCCGCg -3'
miRNA:   3'- -GCGCCGuCUCccuacGGUGGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 29020 0.7 0.178915
Target:  5'- -aCGGCccgcuGGGGGAUGCCuCCaaCGCCGUc -3'
miRNA:   3'- gcGCCGu----CUCCCUACGGuGG--GCGGCG- -5'
11539 5' -63 NC_003085.1 + 25448 0.7 0.183598
Target:  5'- aGCGGCGGccgguuucuGGGugGUCGgCCGCCGCu -3'
miRNA:   3'- gCGCCGUCu--------CCCuaCGGUgGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 15729 0.69 0.18839
Target:  5'- aCGCGGUGGAugGGGAUGaCCcgaaggaugCCGCUGCa -3'
miRNA:   3'- -GCGCCGUCU--CCCUAC-GGug-------GGCGGCG- -5'
11539 5' -63 NC_003085.1 + 19065 0.69 0.193291
Target:  5'- gCGCGGCGGAGcaGgcGCCggGCCCggacggagugcGCCGCa -3'
miRNA:   3'- -GCGCCGUCUCc-CuaCGG--UGGG-----------CGGCG- -5'
11539 5' -63 NC_003085.1 + 32820 0.69 0.20034
Target:  5'- aGCGGCugucgcgacugauuGGGGcccGAgagGCCGCgCGCCGCg -3'
miRNA:   3'- gCGCCGu-------------CUCC---CUa--CGGUGgGCGGCG- -5'
11539 5' -63 NC_003085.1 + 28802 0.69 0.203429
Target:  5'- uGCGGCGcGAGGaGUGCCGCUgGCUc- -3'
miRNA:   3'- gCGCCGU-CUCCcUACGGUGGgCGGcg -5'
11539 5' -63 NC_003085.1 + 39930 0.69 0.203429
Target:  5'- cCGCGucguGCAcuaccAGGGA-GCCgaugACCCGCCGCg -3'
miRNA:   3'- -GCGC----CGUc----UCCCUaCGG----UGGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 23300 0.7 0.157058
Target:  5'- -aCGGCuauGGGGUGCCGCUggagaugcuugaCGCCGCu -3'
miRNA:   3'- gcGCCGucuCCCUACGGUGG------------GCGGCG- -5'
11539 5' -63 NC_003085.1 + 28318 0.71 0.152986
Target:  5'- gCGCGGUgggacgggcgugGGAGuGGAUuuggcuaucGCCAUCCGCgGCa -3'
miRNA:   3'- -GCGCCG------------UCUC-CCUA---------CGGUGGGCGgCG- -5'
11539 5' -63 NC_003085.1 + 18083 0.71 0.149011
Target:  5'- aGCGGCAGuGGGAguugGCCuggaAgCgGCUGCg -3'
miRNA:   3'- gCGCCGUCuCCCUa---CGG----UgGgCGGCG- -5'
11539 5' -63 NC_003085.1 + 12767 0.77 0.050089
Target:  5'- gGUGGCcuGGGGuGAUGCC-CCUGCCGCc -3'
miRNA:   3'- gCGCCGu-CUCC-CUACGGuGGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 44347 0.76 0.060345
Target:  5'- aCGCGGgAGAGGGcgGCCAauCCCGCgucaacgucacuguCGCu -3'
miRNA:   3'- -GCGCCgUCUCCCuaCGGU--GGGCG--------------GCG- -5'
11539 5' -63 NC_003085.1 + 22339 0.73 0.110823
Target:  5'- cCGCaGGCcaggaauGGAGGGAUGCCGugaggCGCCGCu -3'
miRNA:   3'- -GCG-CCG-------UCUCCCUACGGUgg---GCGGCG- -5'
11539 5' -63 NC_003085.1 + 11513 0.72 0.120455
Target:  5'- uGCGGguGuGGuGcgGUUACCgGCCGCg -3'
miRNA:   3'- gCGCCguCuCC-CuaCGGUGGgCGGCG- -5'
11539 5' -63 NC_003085.1 + 27617 0.71 0.133679
Target:  5'- gCGCGGUguguggagccuGGGGGGcucGCCGCCagcgggaCGCCGCa -3'
miRNA:   3'- -GCGCCG-----------UCUCCCua-CGGUGG-------GCGGCG- -5'
11539 5' -63 NC_003085.1 + 20432 0.71 0.134035
Target:  5'- aCGCuGGCAgGAGGaGAUGuCCGCCgcgcgcgaGCCGCu -3'
miRNA:   3'- -GCG-CCGU-CUCC-CUAC-GGUGGg-------CGGCG- -5'
11539 5' -63 NC_003085.1 + 3957 0.71 0.137643
Target:  5'- uCGCGGCccGGGGAUggaGCCAgaCgGCCGCg -3'
miRNA:   3'- -GCGCCGucUCCCUA---CGGUg-GgCGGCG- -5'
11539 5' -63 NC_003085.1 + 17830 0.71 0.149011
Target:  5'- uGCGGCAGgccccuGGGGcaGUGCUgguGCCCGCagGCg -3'
miRNA:   3'- gCGCCGUC------UCCC--UACGG---UGGGCGg-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.