Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 20651 | 0.66 | 0.498314 |
Target: 5'- gCCGUacaGGcuGGCCAUCUGCGucuggauguuGGUGCUg- -3' miRNA: 3'- -GGCAg--CU--CCGGUAGACGC----------UCGCGGag -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 30346 | 0.66 | 0.498314 |
Target: 5'- gCUGUCGcgGGGCgCA-CUGCG-GCGUCUa -3' miRNA: 3'- -GGCAGC--UCCG-GUaGACGCuCGCGGAg -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 14430 | 0.66 | 0.492252 |
Target: 5'- uCCG-CGAgggcuggcccucuacGGCUAUC-GuCGAGCGCUUCg -3' miRNA: 3'- -GGCaGCU---------------CCGGUAGaC-GCUCGCGGAG- -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 43832 | 0.66 | 0.478242 |
Target: 5'- gUGUUGAGGUCG-CgcagGCGGGCGuUCUCc -3' miRNA: 3'- gGCAGCUCCGGUaGa---CGCUCGC-GGAG- -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 16885 | 0.66 | 0.468355 |
Target: 5'- aCGUUGAcGaCCGUCUGCG-G-GCCUCc -3' miRNA: 3'- gGCAGCUcC-GGUAGACGCuCgCGGAG- -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 3510 | 0.66 | 0.468355 |
Target: 5'- gCCGUCu-GG-CGUCUcGCGAGCGUCa- -3' miRNA: 3'- -GGCAGcuCCgGUAGA-CGCUCGCGGag -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 18038 | 0.66 | 0.457603 |
Target: 5'- uCC-UUGAGGCCGUCUaCGAcuugguggagguaGaCGCCUCg -3' miRNA: 3'- -GGcAGCUCCGGUAGAcGCU-------------C-GCGGAG- -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 20218 | 0.66 | 0.448905 |
Target: 5'- cUCGUUGuacuGGUagcgguagCUGCGcAGCGCCUCu -3' miRNA: 3'- -GGCAGCu---CCGgua-----GACGC-UCGCGGAG- -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 42640 | 0.66 | 0.448905 |
Target: 5'- --aUUGAGGCCAUC-GCGucAGC-CCUCg -3' miRNA: 3'- ggcAGCUCCGGUAGaCGC--UCGcGGAG- -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 22444 | 0.67 | 0.439348 |
Target: 5'- -gGUUGGGGCgGUacacguaGCG-GCGCCUCa -3' miRNA: 3'- ggCAGCUCCGgUAga-----CGCuCGCGGAG- -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 23444 | 0.67 | 0.439348 |
Target: 5'- -gGUUGGGGUCGaagugCUGgGGcuGCGCCUCg -3' miRNA: 3'- ggCAGCUCCGGUa----GACgCU--CGCGGAG- -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 13728 | 0.67 | 0.411394 |
Target: 5'- uCCGUCGAGGUCAc--GCGAaGcCGCC-Ca -3' miRNA: 3'- -GGCAGCUCCGGUagaCGCU-C-GCGGaG- -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 17742 | 0.67 | 0.411394 |
Target: 5'- gCGUCGucGGUC-UCaGCGccAGCGCCUCc -3' miRNA: 3'- gGCAGCu-CCGGuAGaCGC--UCGCGGAG- -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 36964 | 0.67 | 0.402323 |
Target: 5'- gCCG-CGGGGCCA--UGUuGGCGCCg- -3' miRNA: 3'- -GGCaGCUCCGGUagACGcUCGCGGag -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 947 | 0.67 | 0.402323 |
Target: 5'- uCCGUCauccacaCCGUCUGCgGAGUGCCUUc -3' miRNA: 3'- -GGCAGcucc---GGUAGACG-CUCGCGGAG- -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 4919 | 0.67 | 0.396943 |
Target: 5'- aCGUgGAGGCCAUCgUcgaaagagucguccgGCGGGUGCUg- -3' miRNA: 3'- gGCAgCUCCGGUAG-A---------------CGCUCGCGGag -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 24388 | 0.67 | 0.393381 |
Target: 5'- aUGUCGuuGGCCAugguggccUCgGCGAcauucauccGCGCCUCg -3' miRNA: 3'- gGCAGCu-CCGGU--------AGaCGCU---------CGCGGAG- -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 2476 | 0.67 | 0.393381 |
Target: 5'- aCGcauagUGuGGCCAUCaGCGcGGCGCUUCa -3' miRNA: 3'- gGCa----GCuCCGGUAGaCGC-UCGCGGAG- -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 31096 | 0.68 | 0.358928 |
Target: 5'- --aUCG-GGCCAUaagcgGCGAGCGgCUCa -3' miRNA: 3'- ggcAGCuCCGGUAga---CGCUCGCgGAG- -5' |
|||||||
11540 | 3' | -59.3 | NC_003085.1 | + | 39491 | 0.68 | 0.34251 |
Target: 5'- gCGUCGAGGCgcUCgagaaGcCGGuGCGCCUCg -3' miRNA: 3'- gGCAGCUCCGguAGa----C-GCU-CGCGGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home