Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11540 | 5' | -51.3 | NC_003085.1 | + | 14097 | 1.13 | 0.001318 |
Target: 5'- cGGGAGAACGUCUACCAAAUCGCCCACu -3' miRNA: 3'- -CCCUCUUGCAGAUGGUUUAGCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 32433 | 0.85 | 0.094698 |
Target: 5'- aGGAGGGCGUCguuggACCGAA-CGCCCGCg -3' miRNA: 3'- cCCUCUUGCAGa----UGGUUUaGCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 36353 | 0.76 | 0.36347 |
Target: 5'- cGGGAGAGCcgugguuuGUCgcUCAAgacAUCGCCCACg -3' miRNA: 3'- -CCCUCUUG--------CAGauGGUU---UAGCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 20033 | 0.73 | 0.490768 |
Target: 5'- uGGAGGACGgcaUUGCCGc--CGCCCGCg -3' miRNA: 3'- cCCUCUUGCa--GAUGGUuuaGCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 44581 | 0.7 | 0.669137 |
Target: 5'- aGGaGGGGACGUCagGCUAAAUgcccCGuCCCACg -3' miRNA: 3'- -CC-CUCUUGCAGa-UGGUUUA----GC-GGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 8618 | 0.7 | 0.690526 |
Target: 5'- cGGGAGcggggcaagucauGGCGUC-ACCGccuUCGCCUGCg -3' miRNA: 3'- -CCCUC-------------UUGCAGaUGGUuu-AGCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 45206 | 0.69 | 0.724923 |
Target: 5'- cGGAcGGACGUCguguuUCu--UCGCCCACg -3' miRNA: 3'- cCCU-CUUGCAGau---GGuuuAGCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 30084 | 0.69 | 0.735835 |
Target: 5'- cGGAcGACGUC-GCCAAGgcCGCCCAg -3' miRNA: 3'- cCCUcUUGCAGaUGGUUUa-GCGGGUg -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 7031 | 0.69 | 0.757313 |
Target: 5'- cGGAGAGgGcaucgCUGCCGAAgucgacCGCCCAg -3' miRNA: 3'- cCCUCUUgCa----GAUGGUUUa-----GCGGGUg -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 17103 | 0.69 | 0.767854 |
Target: 5'- cGGAGGuugGCGUCaUACgCGAGcagCGCCCAUc -3' miRNA: 3'- cCCUCU---UGCAG-AUG-GUUUa--GCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 20800 | 0.68 | 0.798534 |
Target: 5'- uGGAGGGCGUaCU-CCAg--CGCCUGCu -3' miRNA: 3'- cCCUCUUGCA-GAuGGUuuaGCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 33054 | 0.68 | 0.802506 |
Target: 5'- uGGGuuGGGACG-CUACCuugcugcaucgccagGAcgUGCCCGCg -3' miRNA: 3'- -CCC--UCUUGCaGAUGG---------------UUuaGCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 31408 | 0.67 | 0.836797 |
Target: 5'- cGGGAcggccggccugGGACGUCUGCUGAggcuucgguGUCgggcgcgccuGCCCGCg -3' miRNA: 3'- -CCCU-----------CUUGCAGAUGGUU---------UAG----------CGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 15250 | 0.67 | 0.843136 |
Target: 5'- uGGGAGGACGacccggaggccgcgGCCGAGcucacccgccgCGCCCGCg -3' miRNA: 3'- -CCCUCUUGCaga-----------UGGUUUa----------GCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 14374 | 0.67 | 0.854597 |
Target: 5'- cGGGGuGACGUCg--CAGAUgGCCCGg -3' miRNA: 3'- -CCCUcUUGCAGaugGUUUAgCGGGUg -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 22288 | 0.67 | 0.85804 |
Target: 5'- cGGGAGGcCGcacagaagaaccucaUCaGCCAGGcUGCCCGCg -3' miRNA: 3'- -CCCUCUuGC---------------AGaUGGUUUaGCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 39995 | 0.67 | 0.863129 |
Target: 5'- cGGAGAacgacccaGCGUCgACCAcg--GCCCGCu -3' miRNA: 3'- cCCUCU--------UGCAGaUGGUuuagCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 42638 | 0.67 | 0.863129 |
Target: 5'- -uGAGGccaucGCGUCaGCCc--UCGCCCGCg -3' miRNA: 3'- ccCUCU-----UGCAGaUGGuuuAGCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 41095 | 0.66 | 0.871404 |
Target: 5'- aGGAGGAC----GCCAGcgaCGCCCACg -3' miRNA: 3'- cCCUCUUGcagaUGGUUua-GCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 41498 | 0.66 | 0.871404 |
Target: 5'- cGGAGAGCGUaugGCUGuugcCGCCCGa -3' miRNA: 3'- cCCUCUUGCAga-UGGUuua-GCGGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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