miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11540 5' -51.3 NC_003085.1 + 1770 0.66 0.901798
Target:  5'- gGGGAGAcgGCGUUggagugggaCAGGUgGCCCGu -3'
miRNA:   3'- -CCCUCU--UGCAGaug------GUUUAgCGGGUg -5'
11540 5' -51.3 NC_003085.1 + 3412 0.66 0.893148
Target:  5'- cGGGGAGCGUCgucugugcggcgACCAg--CGCCUg- -3'
miRNA:   3'- cCCUCUUGCAGa-----------UGGUuuaGCGGGug -5'
11540 5' -51.3 NC_003085.1 + 5624 0.66 0.894618
Target:  5'- uGGuGGACGggCUGCUGGAgCGCUCGCc -3'
miRNA:   3'- cCCuCUUGCa-GAUGGUUUaGCGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 7031 0.69 0.757313
Target:  5'- cGGAGAGgGcaucgCUGCCGAAgucgacCGCCCAg -3'
miRNA:   3'- cCCUCUUgCa----GAUGGUUUa-----GCGGGUg -5'
11540 5' -51.3 NC_003085.1 + 8618 0.7 0.690526
Target:  5'- cGGGAGcggggcaagucauGGCGUC-ACCGccuUCGCCUGCg -3'
miRNA:   3'- -CCCUC-------------UUGCAGaUGGUuu-AGCGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 14097 1.13 0.001318
Target:  5'- cGGGAGAACGUCUACCAAAUCGCCCACu -3'
miRNA:   3'- -CCCUCUUGCAGAUGGUUUAGCGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 14374 0.67 0.854597
Target:  5'- cGGGGuGACGUCg--CAGAUgGCCCGg -3'
miRNA:   3'- -CCCUcUUGCAGaugGUUUAgCGGGUg -5'
11540 5' -51.3 NC_003085.1 + 14867 0.66 0.879415
Target:  5'- cGGAGGAUGUCgGCCuu-UUGCaccCCGCg -3'
miRNA:   3'- cCCUCUUGCAGaUGGuuuAGCG---GGUG- -5'
11540 5' -51.3 NC_003085.1 + 15222 0.66 0.894618
Target:  5'- aGGGGGcaguaguGCGUCUcguGCUc-GUCGCaCCACg -3'
miRNA:   3'- -CCCUCu------UGCAGA---UGGuuUAGCG-GGUG- -5'
11540 5' -51.3 NC_003085.1 + 15250 0.67 0.843136
Target:  5'- uGGGAGGACGacccggaggccgcgGCCGAGcucacccgccgCGCCCGCg -3'
miRNA:   3'- -CCCUCUUGCaga-----------UGGUUUa----------GCGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 17103 0.69 0.767854
Target:  5'- cGGAGGuugGCGUCaUACgCGAGcagCGCCCAUc -3'
miRNA:   3'- cCCUCU---UGCAG-AUG-GUUUa--GCGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 20033 0.73 0.490768
Target:  5'- uGGAGGACGgcaUUGCCGc--CGCCCGCg -3'
miRNA:   3'- cCCUCUUGCa--GAUGGUuuaGCGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 20800 0.68 0.798534
Target:  5'- uGGAGGGCGUaCU-CCAg--CGCCUGCu -3'
miRNA:   3'- cCCUCUUGCA-GAuGGUuuaGCGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 22288 0.67 0.85804
Target:  5'- cGGGAGGcCGcacagaagaaccucaUCaGCCAGGcUGCCCGCg -3'
miRNA:   3'- -CCCUCUuGC---------------AGaUGGUUUaGCGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 23959 0.66 0.887155
Target:  5'- -cGuGGACGgcugCUGCCGu-UCGCUCACg -3'
miRNA:   3'- ccCuCUUGCa---GAUGGUuuAGCGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 26499 0.66 0.871404
Target:  5'- cGGAGucUGUg-GCCGAcAUCGCCUACg -3'
miRNA:   3'- cCCUCuuGCAgaUGGUU-UAGCGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 28665 0.66 0.887155
Target:  5'- gGGGaAGGGCGUcCUACUGGgcaucAUC-CCCGCg -3'
miRNA:   3'- -CCC-UCUUGCA-GAUGGUU-----UAGcGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 30084 0.69 0.735835
Target:  5'- cGGAcGACGUC-GCCAAGgcCGCCCAg -3'
miRNA:   3'- cCCUcUUGCAGaUGGUUUa-GCGGGUg -5'
11540 5' -51.3 NC_003085.1 + 31408 0.67 0.836797
Target:  5'- cGGGAcggccggccugGGACGUCUGCUGAggcuucgguGUCgggcgcgccuGCCCGCg -3'
miRNA:   3'- -CCCU-----------CUUGCAGAUGGUU---------UAG----------CGGGUG- -5'
11540 5' -51.3 NC_003085.1 + 32433 0.85 0.094698
Target:  5'- aGGAGGGCGUCguuggACCGAA-CGCCCGCg -3'
miRNA:   3'- cCCUCUUGCAGa----UGGUUUaGCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.