miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11541 3' -61 NC_003085.1 + 20463 0.71 0.198686
Target:  5'- cGUGUCCgcgaagucuguGGGCUGCGACucauucauauccGGCcgcucCCGCGCu -3'
miRNA:   3'- -CGCAGG-----------CCCGACGCUGu-----------UCG-----GGCGCG- -5'
11541 3' -61 NC_003085.1 + 23675 0.71 0.204916
Target:  5'- cCGcCCaGGCguccacGCaGCGGGCCCGCGCa -3'
miRNA:   3'- cGCaGGcCCGa-----CGcUGUUCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 48941 0.7 0.210236
Target:  5'- cGCGa--GGGCaGCGcGCAuccgguccGGCCCGCGCg -3'
miRNA:   3'- -CGCaggCCCGaCGC-UGU--------UCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 6089 0.7 0.215126
Target:  5'- gGCGUCCGGGCguacauccGCGcccagccguagGCGAGCCaacuggcaagcauCGUGCu -3'
miRNA:   3'- -CGCAGGCCCGa-------CGC-----------UGUUCGG-------------GCGCG- -5'
11541 3' -61 NC_003085.1 + 2130 0.7 0.221234
Target:  5'- cCGUCCGGGCcuuggcauccaugGUGACGGGCacuugguggaacacaUCGCGCc -3'
miRNA:   3'- cGCAGGCCCGa------------CGCUGUUCG---------------GGCGCG- -5'
11541 3' -61 NC_003085.1 + 30003 0.7 0.221234
Target:  5'- aGCGgccCUGGGCggccuugGCGACGucGUCCGCGg -3'
miRNA:   3'- -CGCa--GGCCCGa------CGCUGUu-CGGGCGCg -5'
11541 3' -61 NC_003085.1 + 694 0.7 0.226915
Target:  5'- cGCGUCCggccucGGGC-GCGGCcuGAGCagguccacCCGCGCc -3'
miRNA:   3'- -CGCAGG------CCCGaCGCUG--UUCG--------GGCGCG- -5'
11541 3' -61 NC_003085.1 + 23874 0.7 0.232719
Target:  5'- cGCGUCgGGGCgugaGCGaACGgcagcAGCCguccaCGCGCa -3'
miRNA:   3'- -CGCAGgCCCGa---CGC-UGU-----UCGG-----GCGCG- -5'
11541 3' -61 NC_003085.1 + 23734 0.7 0.232719
Target:  5'- aCGcCUGGGCgGCG-UucGCCUGCGCg -3'
miRNA:   3'- cGCaGGCCCGaCGCuGuuCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 15109 0.7 0.238647
Target:  5'- ---cCUGGGCUGCGGCuugggccGGCCCaGCGg -3'
miRNA:   3'- cgcaGGCCCGACGCUGu------UCGGG-CGCg -5'
11541 3' -61 NC_003085.1 + 20937 0.7 0.242264
Target:  5'- uGCG-CUGGGUgggcggcaccgcaGCGGCGAGCUCgGCGCc -3'
miRNA:   3'- -CGCaGGCCCGa------------CGCUGUUCGGG-CGCG- -5'
11541 3' -61 NC_003085.1 + 6829 0.7 0.244701
Target:  5'- cCGUCCGccacGGC-GCGGCAGGCCgG-GCa -3'
miRNA:   3'- cGCAGGC----CCGaCGCUGUUCGGgCgCG- -5'
11541 3' -61 NC_003085.1 + 7421 0.7 0.244701
Target:  5'- gGCGcCCagGGGC-GCGuguAGCCCGCGUc -3'
miRNA:   3'- -CGCaGG--CCCGaCGCuguUCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 22185 0.69 0.250258
Target:  5'- uGCGgcgCCGGGCUcugcuggGCGGCcuGCUucUGCGCc -3'
miRNA:   3'- -CGCa--GGCCCGA-------CGCUGuuCGG--GCGCG- -5'
11541 3' -61 NC_003085.1 + 24892 0.69 0.250881
Target:  5'- gGCGUCCuGGUUGa---AAGCCgCGCGCc -3'
miRNA:   3'- -CGCAGGcCCGACgcugUUCGG-GCGCG- -5'
11541 3' -61 NC_003085.1 + 38018 0.69 0.250881
Target:  5'- gGCGUUgGGGCccCGAuucucaaucaaCAGGCCCuGCGCg -3'
miRNA:   3'- -CGCAGgCCCGacGCU-----------GUUCGGG-CGCG- -5'
11541 3' -61 NC_003085.1 + 11882 0.69 0.250881
Target:  5'- aGCGUCgGGGCacccgGCGAUGGggcagccgacacGCCCggaGCGCg -3'
miRNA:   3'- -CGCAGgCCCGa----CGCUGUU------------CGGG---CGCG- -5'
11541 3' -61 NC_003085.1 + 43847 0.69 0.257191
Target:  5'- cGCuggCCGGuGUUGagucCAAGCCCGCGCc -3'
miRNA:   3'- -CGca-GGCC-CGACgcu-GUUCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 28695 0.69 0.257191
Target:  5'- cGCGgacaacgCgCGGaGCUGCGcGCuGGCCCuGCGCu -3'
miRNA:   3'- -CGCa------G-GCC-CGACGC-UGuUCGGG-CGCG- -5'
11541 3' -61 NC_003085.1 + 8677 0.69 0.257191
Target:  5'- cCGUCCGcGC-GCGACGcGUgCGCGCa -3'
miRNA:   3'- cGCAGGCcCGaCGCUGUuCGgGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.