miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11541 3' -61 NC_003085.1 + 14199 1.13 0.00013
Target:  5'- aGCGUCCGGGCUGCGACAAGCCCGCGCg -3'
miRNA:   3'- -CGCAGGCCCGACGCUGUUCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 7038 0.84 0.023184
Target:  5'- cGCG-CgGGGUggGCGAUGAGCCCGCGCg -3'
miRNA:   3'- -CGCaGgCCCGa-CGCUGUUCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 15533 0.77 0.07455
Target:  5'- cGCGUCUGGGUUcGCGGCGAugauucagggauaccGCUCGCGUc -3'
miRNA:   3'- -CGCAGGCCCGA-CGCUGUU---------------CGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 725 0.76 0.087041
Target:  5'- aCGUCCGGGCggUGCucgagcgccucGACgAGGUCCGCGCc -3'
miRNA:   3'- cGCAGGCCCG--ACG-----------CUG-UUCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 45828 0.75 0.105177
Target:  5'- cGCGUCCGGuGCUGguggugaCGACGcaGGCagcacCCGCGCa -3'
miRNA:   3'- -CGCAGGCC-CGAC-------GCUGU--UCG-----GGCGCG- -5'
11541 3' -61 NC_003085.1 + 946 0.74 0.120807
Target:  5'- cGCGUCCGGGUgccaGACAGG-CCGCuGCc -3'
miRNA:   3'- -CGCAGGCCCGacg-CUGUUCgGGCG-CG- -5'
11541 3' -61 NC_003085.1 + 14273 0.74 0.127507
Target:  5'- uGCGgCCaGGCUGCugccguCAAGCgCCGCGCa -3'
miRNA:   3'- -CGCaGGcCCGACGcu----GUUCG-GGCGCG- -5'
11541 3' -61 NC_003085.1 + 47527 0.73 0.138204
Target:  5'- gGCcaCCGGGac-CGACGAGCCCGCGa -3'
miRNA:   3'- -CGcaGGCCCgacGCUGUUCGGGCGCg -5'
11541 3' -61 NC_003085.1 + 10664 0.73 0.149321
Target:  5'- -aGUCCucgGGGCUGcCGGCGugcuggacacaccAGCCCuGCGCg -3'
miRNA:   3'- cgCAGG---CCCGAC-GCUGU-------------UCGGG-CGCG- -5'
11541 3' -61 NC_003085.1 + 30321 0.72 0.153746
Target:  5'- gGCGggggCUGGGCgccGCG-CAAgGCCUGCGCc -3'
miRNA:   3'- -CGCa---GGCCCGa--CGCuGUU-CGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 19144 0.72 0.153746
Target:  5'- cCGUCCGGGCccgGCGccuGCuccGCCgCGCGCc -3'
miRNA:   3'- cGCAGGCCCGa--CGC---UGuu-CGG-GCGCG- -5'
11541 3' -61 NC_003085.1 + 43548 0.72 0.153746
Target:  5'- cGCGUCCa-GCUugcGCGAgaUAGGCCCGCGUc -3'
miRNA:   3'- -CGCAGGccCGA---CGCU--GUUCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 23217 0.72 0.157873
Target:  5'- aGUGgCCGGGCUGCuccaGACGGcCgCCGCGCu -3'
miRNA:   3'- -CGCaGGCCCGACG----CUGUUcG-GGCGCG- -5'
11541 3' -61 NC_003085.1 + 16572 0.72 0.162099
Target:  5'- gGCGcCCGGccaCUGCGACGA-CCCGgGCu -3'
miRNA:   3'- -CGCaGGCCc--GACGCUGUUcGGGCgCG- -5'
11541 3' -61 NC_003085.1 + 9039 0.72 0.170857
Target:  5'- -aGUCCGcgaGGCcGCGGCccuuGGCCCaGCGCa -3'
miRNA:   3'- cgCAGGC---CCGaCGCUGu---UCGGG-CGCG- -5'
11541 3' -61 NC_003085.1 + 43641 0.72 0.175393
Target:  5'- gGCG-CCGGGUcgGUGACGcgGGCCuaucuCGCGCa -3'
miRNA:   3'- -CGCaGGCCCGa-CGCUGU--UCGG-----GCGCG- -5'
11541 3' -61 NC_003085.1 + 11550 0.71 0.180037
Target:  5'- aGCG-CCGGGgccaUGCGcCAAcgcaccguccuGCCCGCGCc -3'
miRNA:   3'- -CGCaGGCCCg---ACGCuGUU-----------CGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 31373 0.71 0.18965
Target:  5'- gGUGU-CGGGC-GCG-CcuGCCCGCGCu -3'
miRNA:   3'- -CGCAgGCCCGaCGCuGuuCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 41889 0.71 0.18965
Target:  5'- gGCGcUUGGGCgGCGccgacaugcGCGAGCCUGUGCu -3'
miRNA:   3'- -CGCaGGCCCGaCGC---------UGUUCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 38184 0.71 0.198174
Target:  5'- gGUGUucccCUGGGCUgGCGGCAacucgggcggcgguGGCUCGUGCa -3'
miRNA:   3'- -CGCA----GGCCCGA-CGCUGU--------------UCGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.