miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11541 3' -61 NC_003085.1 + 13853 0.69 0.276897
Target:  5'- aGUG-CCGGaugUGCGGCAA-CCCGCGCc -3'
miRNA:   3'- -CGCaGGCCcg-ACGCUGUUcGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 48941 0.7 0.210236
Target:  5'- cGCGa--GGGCaGCGcGCAuccgguccGGCCCGCGCg -3'
miRNA:   3'- -CGCaggCCCGaCGC-UGU--------UCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 30003 0.7 0.221234
Target:  5'- aGCGgccCUGGGCggccuugGCGACGucGUCCGCGg -3'
miRNA:   3'- -CGCa--GGCCCGa------CGCUGUu-CGGGCGCg -5'
11541 3' -61 NC_003085.1 + 694 0.7 0.226915
Target:  5'- cGCGUCCggccucGGGC-GCGGCcuGAGCagguccacCCGCGCc -3'
miRNA:   3'- -CGCAGG------CCCGaCGCUG--UUCG--------GGCGCG- -5'
11541 3' -61 NC_003085.1 + 23874 0.7 0.232719
Target:  5'- cGCGUCgGGGCgugaGCGaACGgcagcAGCCguccaCGCGCa -3'
miRNA:   3'- -CGCAGgCCCGa---CGC-UGU-----UCGG-----GCGCG- -5'
11541 3' -61 NC_003085.1 + 28695 0.69 0.257191
Target:  5'- cGCGgacaacgCgCGGaGCUGCGcGCuGGCCCuGCGCu -3'
miRNA:   3'- -CGCa------G-GCC-CGACGC-UGuUCGGG-CGCG- -5'
11541 3' -61 NC_003085.1 + 8677 0.69 0.257191
Target:  5'- cCGUCCGcGC-GCGACGcGUgCGCGCa -3'
miRNA:   3'- cGCAGGCcCGaCGCUGUuCGgGCGCG- -5'
11541 3' -61 NC_003085.1 + 12564 0.69 0.263629
Target:  5'- cGCuggCCGGGCUGgGACGguGGaCCGCuGCu -3'
miRNA:   3'- -CGca-GGCCCGACgCUGU--UCgGGCG-CG- -5'
11541 3' -61 NC_003085.1 + 39490 0.69 0.263629
Target:  5'- cGCGUCgaGGcGCU-CGAgAAGCCgGUGCg -3'
miRNA:   3'- -CGCAGg-CC-CGAcGCUgUUCGGgCGCG- -5'
11541 3' -61 NC_003085.1 + 23675 0.71 0.204916
Target:  5'- cCGcCCaGGCguccacGCaGCGGGCCCGCGCa -3'
miRNA:   3'- cGCaGGcCCGa-----CGcUGUUCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 38184 0.71 0.198174
Target:  5'- gGUGUucccCUGGGCUgGCGGCAacucgggcggcgguGGCUCGUGCa -3'
miRNA:   3'- -CGCA----GGCCCGA-CGCUGU--------------UCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 11550 0.71 0.180037
Target:  5'- aGCG-CCGGGgccaUGCGcCAAcgcaccguccuGCCCGCGCc -3'
miRNA:   3'- -CGCaGGCCCg---ACGCuGUU-----------CGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 7038 0.84 0.023184
Target:  5'- cGCG-CgGGGUggGCGAUGAGCCCGCGCg -3'
miRNA:   3'- -CGCaGgCCCGa-CGCUGUUCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 946 0.74 0.120807
Target:  5'- cGCGUCCGGGUgccaGACAGG-CCGCuGCc -3'
miRNA:   3'- -CGCAGGCCCGacg-CUGUUCgGGCG-CG- -5'
11541 3' -61 NC_003085.1 + 14273 0.74 0.127507
Target:  5'- uGCGgCCaGGCUGCugccguCAAGCgCCGCGCa -3'
miRNA:   3'- -CGCaGGcCCGACGcu----GUUCG-GGCGCG- -5'
11541 3' -61 NC_003085.1 + 47527 0.73 0.138204
Target:  5'- gGCcaCCGGGac-CGACGAGCCCGCGa -3'
miRNA:   3'- -CGcaGGCCCgacGCUGUUCGGGCGCg -5'
11541 3' -61 NC_003085.1 + 10664 0.73 0.149321
Target:  5'- -aGUCCucgGGGCUGcCGGCGugcuggacacaccAGCCCuGCGCg -3'
miRNA:   3'- cgCAGG---CCCGAC-GCUGU-------------UCGGG-CGCG- -5'
11541 3' -61 NC_003085.1 + 43548 0.72 0.153746
Target:  5'- cGCGUCCa-GCUugcGCGAgaUAGGCCCGCGUc -3'
miRNA:   3'- -CGCAGGccCGA---CGCU--GUUCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 23217 0.72 0.157873
Target:  5'- aGUGgCCGGGCUGCuccaGACGGcCgCCGCGCu -3'
miRNA:   3'- -CGCaGGCCCGACG----CUGUUcG-GGCGCG- -5'
11541 3' -61 NC_003085.1 + 16572 0.72 0.162099
Target:  5'- gGCGcCCGGccaCUGCGACGA-CCCGgGCu -3'
miRNA:   3'- -CGCaGGCCc--GACGCUGUUcGGGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.