Results 1 - 20 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11541 | 3' | -61 | NC_003085.1 | + | 11988 | 0.66 | 0.384677 |
Target: 5'- -gGUCCucuuGGcCUGCGGCAgcagcGGCCUGaCGCu -3' miRNA: 3'- cgCAGGc---CC-GACGCUGU-----UCGGGC-GCG- -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 11636 | 0.66 | 0.429354 |
Target: 5'- cGCGggcaggaCGGuGCguugGCG-CAGGCCCcgGCGCu -3' miRNA: 3'- -CGCag-----GCC-CGa---CGCuGUUCGGG--CGCG- -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 25349 | 0.66 | 0.402177 |
Target: 5'- cGCGgugagguagaCGGGCgcgccGaCGACGAcGCCCGcCGCg -3' miRNA: 3'- -CGCag--------GCCCGa----C-GCUGUU-CGGGC-GCG- -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 25949 | 0.66 | 0.411115 |
Target: 5'- cGCGUCCGGcacgGCGGCGAguuGCUCGaCGg -3' miRNA: 3'- -CGCAGGCCcga-CGCUGUU---CGGGC-GCg -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 37324 | 0.66 | 0.429354 |
Target: 5'- aCGUgUGGuCUGCGACGccuGCCUugaGCGCg -3' miRNA: 3'- cGCAgGCCcGACGCUGUu--CGGG---CGCG- -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 15918 | 0.66 | 0.384677 |
Target: 5'- -gGUCCGucgugcguggacGGCgUGUGACAGGCUCG-GCu -3' miRNA: 3'- cgCAGGC------------CCG-ACGCUGUUCGGGCgCG- -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 614 | 0.66 | 0.384677 |
Target: 5'- cCGUCCuGGGC-GCGcucgAGGCUgGCGCg -3' miRNA: 3'- cGCAGG-CCCGaCGCug--UUCGGgCGCG- -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 4943 | 0.66 | 0.393364 |
Target: 5'- uCGUCCGGcggguGCUG-GGCAccaCCGCGCa -3' miRNA: 3'- cGCAGGCC-----CGACgCUGUucgGGCGCG- -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 44370 | 0.66 | 0.405737 |
Target: 5'- cGCGUCaacgucacugucgcuCGGGCUGUucGuCAu-CCCGCGCc -3' miRNA: 3'- -CGCAG---------------GCCCGACG--CuGUucGGGCGCG- -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 2165 | 0.66 | 0.411115 |
Target: 5'- gGCG-CCGaGGUgcgGCGGCugcGCUCGuCGCg -3' miRNA: 3'- -CGCaGGC-CCGa--CGCUGuu-CGGGC-GCG- -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 30216 | 0.66 | 0.429354 |
Target: 5'- aCGUCCugcguGGGCUGCug-GGGCCgGCGg -3' miRNA: 3'- cGCAGG-----CCCGACGcugUUCGGgCGCg -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 11624 | 0.66 | 0.411115 |
Target: 5'- uGUG-CagGGGCUGCuACcAGCgCGCGCg -3' miRNA: 3'- -CGCaGg-CCCGACGcUGuUCGgGCGCG- -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 18291 | 0.66 | 0.420175 |
Target: 5'- aGCcaCCGGGCgGUG-CAcGCCCcgGCGCu -3' miRNA: 3'- -CGcaGGCCCGaCGCuGUuCGGG--CGCG- -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 34528 | 0.66 | 0.411115 |
Target: 5'- aGCGUCagcaacacaGcGGCcGCGAgCGccaccagccGGCCCGCGUg -3' miRNA: 3'- -CGCAGg--------C-CCGaCGCU-GU---------UCGGGCGCG- -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 44313 | 0.66 | 0.429354 |
Target: 5'- cGCGa--GGuGUUGCGACAuggauGCCUGgGCg -3' miRNA: 3'- -CGCaggCC-CGACGCUGUu----CGGGCgCG- -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 30393 | 0.66 | 0.411115 |
Target: 5'- gGUGcCUGGGCUggagaaacagGCGGCAcuGGCgaGCGCc -3' miRNA: 3'- -CGCaGGCCCGA----------CGCUGU--UCGggCGCG- -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 7357 | 0.66 | 0.417444 |
Target: 5'- cGCGcccCUGGGCgccGCuccaguacgaggccGACGGcGCCCGCGUg -3' miRNA: 3'- -CGCa--GGCCCGa--CG--------------CUGUU-CGGGCGCG- -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 18035 | 0.66 | 0.426588 |
Target: 5'- cGCGcugCCGGcGCUucagGUGGCcccagcagagcccaGAGCgCCGCGCu -3' miRNA: 3'- -CGCa--GGCC-CGA----CGCUG--------------UUCG-GGCGCG- -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 2348 | 0.66 | 0.420175 |
Target: 5'- uGCGacaUCCGGGagGCGcaguGCGAGgCCGCGg -3' miRNA: 3'- -CGC---AGGCCCgaCGC----UGUUCgGGCGCg -5' |
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11541 | 3' | -61 | NC_003085.1 | + | 5847 | 0.66 | 0.429354 |
Target: 5'- -gGUCCGGGaCUGgGAC-GGCaCCGUc- -3' miRNA: 3'- cgCAGGCCC-GACgCUGuUCG-GGCGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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