miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11541 3' -61 NC_003085.1 + 614 0.66 0.384677
Target:  5'- cCGUCCuGGGC-GCGcucgAGGCUgGCGCg -3'
miRNA:   3'- cGCAGG-CCCGaCGCug--UUCGGgCGCG- -5'
11541 3' -61 NC_003085.1 + 694 0.7 0.226915
Target:  5'- cGCGUCCggccucGGGC-GCGGCcuGAGCagguccacCCGCGCc -3'
miRNA:   3'- -CGCAGG------CCCGaCGCUG--UUCG--------GGCGCG- -5'
11541 3' -61 NC_003085.1 + 725 0.76 0.087041
Target:  5'- aCGUCCGGGCggUGCucgagcgccucGACgAGGUCCGCGCc -3'
miRNA:   3'- cGCAGGCCCG--ACG-----------CUG-UUCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 946 0.74 0.120807
Target:  5'- cGCGUCCGGGUgccaGACAGG-CCGCuGCc -3'
miRNA:   3'- -CGCAGGCCCGacg-CUGUUCgGGCG-CG- -5'
11541 3' -61 NC_003085.1 + 1543 0.68 0.290693
Target:  5'- aGCGUCU--GCUGUcGCGAGgCCGUGCg -3'
miRNA:   3'- -CGCAGGccCGACGcUGUUCgGGCGCG- -5'
11541 3' -61 NC_003085.1 + 2130 0.7 0.221234
Target:  5'- cCGUCCGGGCcuuggcauccaugGUGACGGGCacuugguggaacacaUCGCGCc -3'
miRNA:   3'- cGCAGGCCCGa------------CGCUGUUCG---------------GGCGCG- -5'
11541 3' -61 NC_003085.1 + 2165 0.66 0.411115
Target:  5'- gGCG-CCGaGGUgcgGCGGCugcGCUCGuCGCg -3'
miRNA:   3'- -CGCaGGC-CCGa--CGCUGuu-CGGGC-GCG- -5'
11541 3' -61 NC_003085.1 + 2348 0.66 0.420175
Target:  5'- uGCGacaUCCGGGagGCGcaguGCGAGgCCGCGg -3'
miRNA:   3'- -CGC---AGGCCCgaCGC----UGUUCgGGCGCg -5'
11541 3' -61 NC_003085.1 + 2362 0.68 0.290693
Target:  5'- aGCG-CCGuGCUGCcg-GAGCCCGCGa -3'
miRNA:   3'- -CGCaGGCcCGACGcugUUCGGGCGCg -5'
11541 3' -61 NC_003085.1 + 3288 0.69 0.263629
Target:  5'- aGCG-CCGGcaucGCcuUGCGGCAucgggccagGGCCCGCGa -3'
miRNA:   3'- -CGCaGGCC----CG--ACGCUGU---------UCGGGCGCg -5'
11541 3' -61 NC_003085.1 + 4016 0.68 0.305022
Target:  5'- ---cCCGGGCcGCGACAAcaucGCCgCgGCGCu -3'
miRNA:   3'- cgcaGGCCCGaCGCUGUU----CGG-G-CGCG- -5'
11541 3' -61 NC_003085.1 + 4520 0.67 0.367688
Target:  5'- aCG-CUGGGCacgGCGAUAccuCCCGUGCg -3'
miRNA:   3'- cGCaGGCCCGa--CGCUGUuc-GGGCGCG- -5'
11541 3' -61 NC_003085.1 + 4943 0.66 0.393364
Target:  5'- uCGUCCGGcggguGCUG-GGCAccaCCGCGCa -3'
miRNA:   3'- cGCAGGCC-----CGACgCUGUucgGGCGCG- -5'
11541 3' -61 NC_003085.1 + 5643 0.66 0.402177
Target:  5'- gGCGUagaCGuGGCgcaccgucgcgGCGcCAGGCCCuuuGCGCg -3'
miRNA:   3'- -CGCAg--GC-CCGa----------CGCuGUUCGGG---CGCG- -5'
11541 3' -61 NC_003085.1 + 5847 0.66 0.429354
Target:  5'- -gGUCCGGGaCUGgGAC-GGCaCCGUc- -3'
miRNA:   3'- cgCAGGCCC-GACgCUGuUCG-GGCGcg -5'
11541 3' -61 NC_003085.1 + 6089 0.7 0.215126
Target:  5'- gGCGUCCGGGCguacauccGCGcccagccguagGCGAGCCaacuggcaagcauCGUGCu -3'
miRNA:   3'- -CGCAGGCCCGa-------CGC-----------UGUUCGG-------------GCGCG- -5'
11541 3' -61 NC_003085.1 + 6632 0.67 0.335287
Target:  5'- cGCuGUCaCGGGUUGUGcCAgucaacugcgccAGUCCGUGCc -3'
miRNA:   3'- -CG-CAG-GCCCGACGCuGU------------UCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 6829 0.7 0.244701
Target:  5'- cCGUCCGccacGGC-GCGGCAGGCCgG-GCa -3'
miRNA:   3'- cGCAGGC----CCGaCGCUGUUCGGgCgCG- -5'
11541 3' -61 NC_003085.1 + 7038 0.84 0.023184
Target:  5'- cGCG-CgGGGUggGCGAUGAGCCCGCGCg -3'
miRNA:   3'- -CGCaGgCCCGa-CGCUGUUCGGGCGCG- -5'
11541 3' -61 NC_003085.1 + 7214 0.67 0.359389
Target:  5'- uGCGgaUUCGucGGCUGCGGuguCAccAGCCgGCGCg -3'
miRNA:   3'- -CGC--AGGC--CCGACGCU---GU--UCGGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.