miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11544 5' -65.2 NC_003085.1 + 15039 1.05 0.000136
Target:  5'- cCGGCCCAAGCCGCAGCCCAGGGCCAAa -3'
miRNA:   3'- -GCCGGGUUCGGCGUCGGGUCCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 6760 0.79 0.018308
Target:  5'- gCGGCCgCAAGCCGC--UCCAGGGCCAu -3'
miRNA:   3'- -GCCGG-GUUCGGCGucGGGUCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 45425 0.78 0.023677
Target:  5'- gCGGUCCAGGCUGcCAGCCaccugGGGGCCGAc -3'
miRNA:   3'- -GCCGGGUUCGGC-GUCGGg----UCCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 26385 0.75 0.044225
Target:  5'- -uGCUCGGGCCGCugagcGCCCAGGGCUg- -3'
miRNA:   3'- gcCGGGUUCGGCGu----CGGGUCCCGGuu -5'
11544 5' -65.2 NC_003085.1 + 35890 0.75 0.045491
Target:  5'- ---aCCGGGCCGCGGaguCCCAGGGCCAu -3'
miRNA:   3'- gccgGGUUCGGCGUC---GGGUCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 30099 0.74 0.052961
Target:  5'- uGGCCCuggAAGCCGCggacgacgucgccaaGgccGCCCAGGGCCGc -3'
miRNA:   3'- gCCGGG---UUCGGCG---------------U---CGGGUCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 15113 0.74 0.053861
Target:  5'- uGGCCCuGGGCUGCGGCUU-GGGCCGg -3'
miRNA:   3'- gCCGGG-UUCGGCGUCGGGuCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 31682 0.73 0.055395
Target:  5'- aGGCCCcgcGGCCGguGCCUccuGGGGCUg- -3'
miRNA:   3'- gCCGGGu--UCGGCguCGGG---UCCCGGuu -5'
11544 5' -65.2 NC_003085.1 + 15182 0.73 0.056971
Target:  5'- aCGGCCCGgcugAGCCGguGCgCCAGcGCCGc -3'
miRNA:   3'- -GCCGGGU----UCGGCguCG-GGUCcCGGUu -5'
11544 5' -65.2 NC_003085.1 + 39313 0.73 0.06372
Target:  5'- gCGGCCCAGagugcguuguacGCCGUAGCCU--GGCCGAg -3'
miRNA:   3'- -GCCGGGUU------------CGGCGUCGGGucCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 30004 0.73 0.064436
Target:  5'- gCGGCCCugggcGGCCuuggcgacgucguccGCGGCuuCCAGGGCCAGc -3'
miRNA:   3'- -GCCGGGu----UCGG---------------CGUCG--GGUCCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 770 0.71 0.084134
Target:  5'- -uGCUCAGGCCGC-GCCCGaGGCCGGa -3'
miRNA:   3'- gcCGGGUUCGGCGuCGGGUcCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 40313 0.71 0.086251
Target:  5'- aGGCCCcGGCgGCgaagAGCCCgccaccaauggcgAGGGCCAGc -3'
miRNA:   3'- gCCGGGuUCGgCG----UCGGG-------------UCCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 37110 0.7 0.099236
Target:  5'- gCGGUaCAGGCCGguGUCCGGGucGCCAc -3'
miRNA:   3'- -GCCGgGUUCGGCguCGGGUCC--CGGUu -5'
11544 5' -65.2 NC_003085.1 + 9049 0.7 0.099236
Target:  5'- gGGCCgGugaaguccgcgaGGCCGCGGCCCuuGGCCc- -3'
miRNA:   3'- gCCGGgU------------UCGGCGUCGGGucCCGGuu -5'
11544 5' -65.2 NC_003085.1 + 38264 0.7 0.104816
Target:  5'- -cGCCCGAguuGCCGcCAGCCCAGGGgaaCAc -3'
miRNA:   3'- gcCGGGUU---CGGC-GUCGGGUCCCg--GUu -5'
11544 5' -65.2 NC_003085.1 + 2707 0.7 0.110691
Target:  5'- aCGGCCCAAGCgGgUAGCUgGGaGCCAGc -3'
miRNA:   3'- -GCCGGGUUCGgC-GUCGGgUCcCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 32841 0.69 0.113742
Target:  5'- gGGCCCGagaGGCCGCGcGCCgCGGGaCCGc -3'
miRNA:   3'- gCCGGGU---UCGGCGU-CGG-GUCCcGGUu -5'
11544 5' -65.2 NC_003085.1 + 41120 0.69 0.115925
Target:  5'- aGGCCCAGGCCG-AGCgCGGcaccccguacugcuGGCCGGa -3'
miRNA:   3'- gCCGGGUUCGGCgUCGgGUC--------------CCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 30316 0.69 0.116872
Target:  5'- gGGCUgGGcGCCGCGcaaggccuGCgCCAGGGCCAu -3'
miRNA:   3'- gCCGGgUU-CGGCGU--------CG-GGUCCCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.