miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11544 5' -65.2 NC_003085.1 + 770 0.71 0.084134
Target:  5'- -uGCUCAGGCCGC-GCCCGaGGCCGGa -3'
miRNA:   3'- gcCGGGUUCGGCGuCGGGUcCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 782 0.68 0.148856
Target:  5'- gCGGCCUgcuGCUGUGGCCCcaGGCCAc -3'
miRNA:   3'- -GCCGGGuu-CGGCGUCGGGucCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 865 0.68 0.156974
Target:  5'- -cGUCCA--CCGUGGCCUGGGGCCAc -3'
miRNA:   3'- gcCGGGUucGGCGUCGGGUCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 2707 0.7 0.110691
Target:  5'- aCGGCCCAAGCgGgUAGCUgGGaGCCAGc -3'
miRNA:   3'- -GCCGGGUUCGgC-GUCGGgUCcCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 3209 0.69 0.123041
Target:  5'- uGGCCCGAuGCCGCaaGGCgaugccggcgcuaCCuGGGCCGg -3'
miRNA:   3'- gCCGGGUU-CGGCG--UCG-------------GGuCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 3299 0.68 0.139995
Target:  5'- cCGGCCCAGguagcgccggcaucGCCuuGCGGCaucgggCCAGGGCCc- -3'
miRNA:   3'- -GCCGGGUU--------------CGG--CGUCG------GGUCCCGGuu -5'
11544 5' -65.2 NC_003085.1 + 6760 0.79 0.018308
Target:  5'- gCGGCCgCAAGCCGC--UCCAGGGCCAu -3'
miRNA:   3'- -GCCGG-GUUCGGCGucGGGUCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 7439 0.69 0.12986
Target:  5'- uCGGCCUcguacugGAGCgGC-GCCCAGGGgCGc -3'
miRNA:   3'- -GCCGGG-------UUCGgCGuCGGGUCCCgGUu -5'
11544 5' -65.2 NC_003085.1 + 8965 0.67 0.179042
Target:  5'- gGGCCaagGGCCGCGGCCCGcggacuucaccGGCCc- -3'
miRNA:   3'- gCCGGgu-UCGGCGUCGGGUc----------CCGGuu -5'
11544 5' -65.2 NC_003085.1 + 9049 0.7 0.099236
Target:  5'- gGGCCgGugaaguccgcgaGGCCGCGGCCCuuGGCCc- -3'
miRNA:   3'- gCCGGgU------------UCGGCGUCGGGucCCGGuu -5'
11544 5' -65.2 NC_003085.1 + 9078 0.66 0.198637
Target:  5'- uCGGCCCcAGCaaguGCGGCuCCAuGGCCc- -3'
miRNA:   3'- -GCCGGGuUCGg---CGUCG-GGUcCCGGuu -5'
11544 5' -65.2 NC_003085.1 + 9156 0.69 0.126749
Target:  5'- gGGCCaugGAGCCGCAcuugCUGGGGCCGAa -3'
miRNA:   3'- gCCGGg--UUCGGCGUcg--GGUCCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 11438 0.69 0.126749
Target:  5'- aCGGCCCGugcaaggaguggGGCUGCAcCgCCGGGGuCCAGa -3'
miRNA:   3'- -GCCGGGU------------UCGGCGUcG-GGUCCC-GGUU- -5'
11544 5' -65.2 NC_003085.1 + 11525 0.67 0.16549
Target:  5'- gCGGUuaCC-GGCCGCgcguucgucgAGCgCCGGGGCCAu -3'
miRNA:   3'- -GCCG--GGuUCGGCG----------UCG-GGUCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 15039 1.05 0.000136
Target:  5'- cCGGCCCAAGCCGCAGCCCAGGGCCAAa -3'
miRNA:   3'- -GCCGGGUUCGGCGUCGGGUCCCGGUU- -5'
11544 5' -65.2 NC_003085.1 + 15113 0.74 0.053861
Target:  5'- uGGCCCuGGGCUGCGGCUU-GGGCCGg -3'
miRNA:   3'- gCCGGG-UUCGGCGUCGGGuCCCGGUu -5'
11544 5' -65.2 NC_003085.1 + 15182 0.73 0.056971
Target:  5'- aCGGCCCGgcugAGCCGguGCgCCAGcGCCGc -3'
miRNA:   3'- -GCCGGGU----UCGGCguCG-GGUCcCGGUu -5'
11544 5' -65.2 NC_003085.1 + 15271 0.67 0.168125
Target:  5'- gCGGCCgAGcucacccGCCGCgcccgcgucaugcuGGCCCGGGGCg-- -3'
miRNA:   3'- -GCCGGgUU-------CGGCG--------------UCGGGUCCCGguu -5'
11544 5' -65.2 NC_003085.1 + 16648 0.66 0.220074
Target:  5'- -aGCCCGGGUcguCGCAGUggCCGGGcGCCAc -3'
miRNA:   3'- gcCGGGUUCG---GCGUCG--GGUCC-CGGUu -5'
11544 5' -65.2 NC_003085.1 + 17274 0.66 0.209119
Target:  5'- aGcGCCCAGGCCucgGUGGCCCGGGacucgucucccGUCAGg -3'
miRNA:   3'- gC-CGGGUUCGG---CGUCGGGUCC-----------CGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.