miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11547 5' -54.9 NC_003085.1 + 16876 1.12 0.000606
Target:  5'- uCAACGAGAAGGCCAACGAGGCCGAGCg -3'
miRNA:   3'- -GUUGCUCUUCCGGUUGCUCCGGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 25618 0.89 0.026068
Target:  5'- gCGACGAGGAGGagaCGACGaAGGCCGGGCg -3'
miRNA:   3'- -GUUGCUCUUCCg--GUUGC-UCCGGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 17193 0.83 0.067065
Target:  5'- aGACGAGucccGGGCCAcCGAGGCCuGGGCg -3'
miRNA:   3'- gUUGCUCu---UCCGGUuGCUCCGG-CUCG- -5'
11547 5' -54.9 NC_003085.1 + 45030 0.8 0.109517
Target:  5'- uGGCGAcuGGGCCAACGAGGCguuUGAGCc -3'
miRNA:   3'- gUUGCUcuUCCGGUUGCUCCG---GCUCG- -5'
11547 5' -54.9 NC_003085.1 + 25188 0.79 0.122679
Target:  5'- uGGCGAuGAGcGCCAACGucGCCGAGCa -3'
miRNA:   3'- gUUGCUcUUC-CGGUUGCucCGGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 24357 0.79 0.137298
Target:  5'- gCGACGGGAcGGCCuuUGGcGGCCGGGCc -3'
miRNA:   3'- -GUUGCUCUuCCGGuuGCU-CCGGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 29856 0.78 0.149294
Target:  5'- gGACGAGAagcaugccgccaGGGCCAgugcgcACGAGGUgGGGCg -3'
miRNA:   3'- gUUGCUCU------------UCCGGU------UGCUCCGgCUCG- -5'
11547 5' -54.9 NC_003085.1 + 10154 0.78 0.157814
Target:  5'- gCGGCGGGGAGuaCcGCGAGGaCCGGGCg -3'
miRNA:   3'- -GUUGCUCUUCcgGuUGCUCC-GGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 45119 0.76 0.201795
Target:  5'- cCGGCgGAGGAGGCUGGCGAcuGGCaGAGCa -3'
miRNA:   3'- -GUUG-CUCUUCCGGUUGCU--CCGgCUCG- -5'
11547 5' -54.9 NC_003085.1 + 44350 0.74 0.26276
Target:  5'- uCGACGGGAGGaacaaGCCAGgcAGGCCGAGUc -3'
miRNA:   3'- -GUUGCUCUUC-----CGGUUgcUCCGGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 2349 0.74 0.276619
Target:  5'- gCGACauccGGGAGGCgCAguGCGAGGCCGcGGCg -3'
miRNA:   3'- -GUUGc---UCUUCCG-GU--UGCUCCGGC-UCG- -5'
11547 5' -54.9 NC_003085.1 + 36842 0.74 0.283765
Target:  5'- --cCGAGGAGuacGCCGacgGCGAGGCCG-GCg -3'
miRNA:   3'- guuGCUCUUC---CGGU---UGCUCCGGCuCG- -5'
11547 5' -54.9 NC_003085.1 + 19326 0.74 0.291056
Target:  5'- uGACGGGGGccuauGUCAACGAGGCCcGGCa -3'
miRNA:   3'- gUUGCUCUUc----CGGUUGCUCCGGcUCG- -5'
11547 5' -54.9 NC_003085.1 + 15255 0.73 0.298493
Target:  5'- gGACGAcccGGAGGCCGc---GGCCGAGCu -3'
miRNA:   3'- gUUGCU---CUUCCGGUugcuCCGGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 22247 0.73 0.298493
Target:  5'- cCAACGAGAcgaAGGagcggCAGC-AGGCCGAGUg -3'
miRNA:   3'- -GUUGCUCU---UCCg----GUUGcUCCGGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 18870 0.73 0.313806
Target:  5'- cCAGCGA--AGGCUGAUGGaGCCGGGCg -3'
miRNA:   3'- -GUUGCUcuUCCGGUUGCUcCGGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 33644 0.73 0.313806
Target:  5'- aGGCGaAGAGGGCC-ACGGcGGCC-AGCa -3'
miRNA:   3'- gUUGC-UCUUCCGGuUGCU-CCGGcUCG- -5'
11547 5' -54.9 NC_003085.1 + 745 0.73 0.329706
Target:  5'- -cGCGGGAcagguGGCCGGCGAcGuCCGGGCg -3'
miRNA:   3'- guUGCUCUu----CCGGUUGCUcC-GGCUCG- -5'
11547 5' -54.9 NC_003085.1 + 21588 0.72 0.38001
Target:  5'- uGACGGGcauGGCCGacaucauGCGuGGCgCGAGCg -3'
miRNA:   3'- gUUGCUCuu-CCGGU-------UGCuCCG-GCUCG- -5'
11547 5' -54.9 NC_003085.1 + 2376 0.72 0.380906
Target:  5'- uGGCGAGGcAGGCCAGCGccgugcuGCCgGAGCc -3'
miRNA:   3'- gUUGCUCU-UCCGGUUGCuc-----CGG-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.