Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11547 | 5' | -54.9 | NC_003085.1 | + | 11664 | 0.7 | 0.446979 |
Target: 5'- --cCGGGu-GGCCGAgGAGGUgGGGCu -3' miRNA: 3'- guuGCUCuuCCGGUUgCUCCGgCUCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 21588 | 0.72 | 0.38001 |
Target: 5'- uGACGGGcauGGCCGacaucauGCGuGGCgCGAGCg -3' miRNA: 3'- gUUGCUCuu-CCGGU-------UGCuCCG-GCUCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 10028 | 0.71 | 0.38994 |
Target: 5'- --cCGAGuccuuuGcGCCAuGCGAGGUCGAGCg -3' miRNA: 3'- guuGCUCuu----C-CGGU-UGCUCCGGCUCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 28412 | 0.71 | 0.399113 |
Target: 5'- aCGGCGGGAGGGCUGuugugagaguCGAGGCUGGa- -3' miRNA: 3'- -GUUGCUCUUCCGGUu---------GCUCCGGCUcg -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 8472 | 0.71 | 0.408423 |
Target: 5'- uGACGcgccAGAAGGCCGcCGAGGCgCuGGCc -3' miRNA: 3'- gUUGC----UCUUCCGGUuGCUCCG-GcUCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 31903 | 0.71 | 0.417867 |
Target: 5'- -uGCGGaacGAGGCgGACGAGGCacggGAGCa -3' miRNA: 3'- guUGCUc--UUCCGgUUGCUCCGg---CUCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 30740 | 0.71 | 0.427444 |
Target: 5'- cCAACGAGAagaagucagacAGGgCAugGcAGGCaGAGCa -3' miRNA: 3'- -GUUGCUCU-----------UCCgGUugC-UCCGgCUCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 35729 | 0.71 | 0.437148 |
Target: 5'- aCGGCGAGGGcaggguGGCCGAUGuccucGCUGAGCa -3' miRNA: 3'- -GUUGCUCUU------CCGGUUGCuc---CGGCUCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 5710 | 0.7 | 0.44599 |
Target: 5'- uGGCGGGAcucGGCCGucuacucGCG-GGCCGAGg -3' miRNA: 3'- gUUGCUCUu--CCGGU-------UGCuCCGGCUCg -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 18870 | 0.73 | 0.313806 |
Target: 5'- cCAGCGA--AGGCUGAUGGaGCCGGGCg -3' miRNA: 3'- -GUUGCUcuUCCGGUUGCUcCGGCUCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 33644 | 0.73 | 0.313806 |
Target: 5'- aGGCGaAGAGGGCC-ACGGcGGCC-AGCa -3' miRNA: 3'- gUUGC-UCUUCCGGuUGCU-CCGGcUCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 15255 | 0.73 | 0.298493 |
Target: 5'- gGACGAcccGGAGGCCGc---GGCCGAGCu -3' miRNA: 3'- gUUGCU---CUUCCGGUugcuCCGGCUCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 25618 | 0.89 | 0.026068 |
Target: 5'- gCGACGAGGAGGagaCGACGaAGGCCGGGCg -3' miRNA: 3'- -GUUGCUCUUCCg--GUUGC-UCCGGCUCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 17193 | 0.83 | 0.067065 |
Target: 5'- aGACGAGucccGGGCCAcCGAGGCCuGGGCg -3' miRNA: 3'- gUUGCUCu---UCCGGUuGCUCCGG-CUCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 25188 | 0.79 | 0.122679 |
Target: 5'- uGGCGAuGAGcGCCAACGucGCCGAGCa -3' miRNA: 3'- gUUGCUcUUC-CGGUUGCucCGGCUCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 24357 | 0.79 | 0.137298 |
Target: 5'- gCGACGGGAcGGCCuuUGGcGGCCGGGCc -3' miRNA: 3'- -GUUGCUCUuCCGGuuGCU-CCGGCUCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 10154 | 0.78 | 0.157814 |
Target: 5'- gCGGCGGGGAGuaCcGCGAGGaCCGGGCg -3' miRNA: 3'- -GUUGCUCUUCcgGuUGCUCC-GGCUCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 2349 | 0.74 | 0.276619 |
Target: 5'- gCGACauccGGGAGGCgCAguGCGAGGCCGcGGCg -3' miRNA: 3'- -GUUGc---UCUUCCG-GU--UGCUCCGGC-UCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 19326 | 0.74 | 0.291056 |
Target: 5'- uGACGGGGGccuauGUCAACGAGGCCcGGCa -3' miRNA: 3'- gUUGCUCUUc----CGGUUGCUCCGGcUCG- -5' |
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11547 | 5' | -54.9 | NC_003085.1 | + | 22247 | 0.73 | 0.298493 |
Target: 5'- cCAACGAGAcgaAGGagcggCAGC-AGGCCGAGUg -3' miRNA: 3'- -GUUGCUCU---UCCg----GUUGcUCCGGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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