miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11556 5' -52.1 NC_003085.1 + 428 0.66 0.86966
Target:  5'- cGUUGUCGGCgcuCAUcccuUGCCGCccuucuuGGCGGCGGg -3'
miRNA:   3'- -UAGCAGCUG---GUG----AUGGCG-------UUGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 3725 0.68 0.735912
Target:  5'- cUCGUCGuGCCACUccgucugccACCgaGCAuCGACGGu -3'
miRNA:   3'- uAGCAGC-UGGUGA---------UGG--CGUuGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 3769 0.66 0.878445
Target:  5'- -aCGUCGcGCUGCgugGCCGCAuccCAACGc -3'
miRNA:   3'- uaGCAGC-UGGUGa--UGGCGUu--GUUGCc -5'
11556 5' -52.1 NC_003085.1 + 7010 0.68 0.777961
Target:  5'- --aGUCGACCGCccaGCCGCccgggauGCggUGGa -3'
miRNA:   3'- uagCAGCUGGUGa--UGGCGu------UGuuGCC- -5'
11556 5' -52.1 NC_003085.1 + 7442 0.66 0.862239
Target:  5'- -cCGUCGGCCuCgUACUGgAGCGGCGc -3'
miRNA:   3'- uaGCAGCUGGuG-AUGGCgUUGUUGCc -5'
11556 5' -52.1 NC_003085.1 + 7558 0.75 0.375156
Target:  5'- -aCGUCGACC-UUGCCGCGGcCGAgGGg -3'
miRNA:   3'- uaGCAGCUGGuGAUGGCGUU-GUUgCC- -5'
11556 5' -52.1 NC_003085.1 + 7859 0.67 0.788109
Target:  5'- -cUGUUgGGCCGCgaaugcgcucGCCGCGACGAUGGc -3'
miRNA:   3'- uaGCAG-CUGGUGa---------UGGCGUUGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 10115 0.66 0.878445
Target:  5'- cGUUGaUgGACCugcucgcagcggACUACCGCGaacugcGCGGCGGg -3'
miRNA:   3'- -UAGC-AgCUGG------------UGAUGGCGU------UGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 11027 0.66 0.878445
Target:  5'- cUCGUCGACCGCcgagacagGCCcgGACuuguGACGGg -3'
miRNA:   3'- uAGCAGCUGGUGa-------UGGcgUUG----UUGCC- -5'
11556 5' -52.1 NC_003085.1 + 11241 0.74 0.421911
Target:  5'- --gGUgGugCACUACCGCGGCAAgucCGGu -3'
miRNA:   3'- uagCAgCugGUGAUGGCGUUGUU---GCC- -5'
11556 5' -52.1 NC_003085.1 + 12071 0.68 0.757204
Target:  5'- -gCGUCaGGCCGCUGCUGCcGCAGg-- -3'
miRNA:   3'- uaGCAG-CUGGUGAUGGCGuUGUUgcc -5'
11556 5' -52.1 NC_003085.1 + 12865 0.67 0.788109
Target:  5'- -gCGUgGAgCAcCUGCC-CGACAACGGc -3'
miRNA:   3'- uaGCAgCUgGU-GAUGGcGUUGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 13395 0.66 0.836069
Target:  5'- uUCGUCGGCCACggacaugACCugGACGugGa -3'
miRNA:   3'- uAGCAGCUGGUGa------UGGcgUUGUugCc -5'
11556 5' -52.1 NC_003085.1 + 13729 0.67 0.826885
Target:  5'- -cCGUCGAggUCACgcgaaGCCGCc-CAACGGg -3'
miRNA:   3'- uaGCAGCU--GGUGa----UGGCGuuGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 14487 0.69 0.714183
Target:  5'- -aCGUCGACCGCauCCGCAagaaguACAACc- -3'
miRNA:   3'- uaGCAGCUGGUGauGGCGU------UGUUGcc -5'
11556 5' -52.1 NC_003085.1 + 16680 0.72 0.546737
Target:  5'- -cUGUCGACCuGCUACaCGCAG-GGCGGg -3'
miRNA:   3'- uaGCAGCUGG-UGAUG-GCGUUgUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 19822 1.08 0.002355
Target:  5'- cAUCGUCGACCACUACCGCAACAACGGc -3'
miRNA:   3'- -UAGCAGCUGGUGAUGGCGUUGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 20498 0.66 0.870471
Target:  5'- aAUCGUCaAgCGgUACCGCGACGagcGCGa -3'
miRNA:   3'- -UAGCAGcUgGUgAUGGCGUUGU---UGCc -5'
11556 5' -52.1 NC_003085.1 + 20930 0.67 0.788109
Target:  5'- --gGUgGGCgGC-ACCGCAGCGGCGa -3'
miRNA:   3'- uagCAgCUGgUGaUGGCGUUGUUGCc -5'
11556 5' -52.1 NC_003085.1 + 21591 0.66 0.870471
Target:  5'- -gCGUCa---GC-GCCGCGACGACGGg -3'
miRNA:   3'- uaGCAGcuggUGaUGGCGUUGUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.