miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11556 5' -52.1 NC_003085.1 + 22760 0.67 0.798086
Target:  5'- -gCGcCGACgACgcccGCCGCGgugGCGACGGc -3'
miRNA:   3'- uaGCaGCUGgUGa---UGGCGU---UGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 40500 0.7 0.624829
Target:  5'- cGUCGUCGAgCCGgaGCCGCugaaGGCGACuGGc -3'
miRNA:   3'- -UAGCAGCU-GGUgaUGGCG----UUGUUG-CC- -5'
11556 5' -52.1 NC_003085.1 + 27486 0.7 0.636089
Target:  5'- cUCGUCGGCCugUggaACUGgAcguACGACGGc -3'
miRNA:   3'- uAGCAGCUGGugA---UGGCgU---UGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 44085 0.69 0.714183
Target:  5'- uUCGcCGuCCAUcGCCGCGGCcagccGACGGa -3'
miRNA:   3'- uAGCaGCuGGUGaUGGCGUUG-----UUGCC- -5'
11556 5' -52.1 NC_003085.1 + 14487 0.69 0.714183
Target:  5'- -aCGUCGACCGCauCCGCAagaaguACAACc- -3'
miRNA:   3'- uaGCAGCUGGUGauGGCGU------UGUUGcc -5'
11556 5' -52.1 NC_003085.1 + 42643 0.69 0.724009
Target:  5'- cGUCGUCGcgccaccuccauaGCCACUgcACCGCcgu-GCGGg -3'
miRNA:   3'- -UAGCAGC-------------UGGUGA--UGGCGuuguUGCC- -5'
11556 5' -52.1 NC_003085.1 + 38246 0.68 0.735912
Target:  5'- cGUCGgcggUGGCCACcuacuuCCGCGcgacgACGACGGa -3'
miRNA:   3'- -UAGCa---GCUGGUGau----GGCGU-----UGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 41547 0.68 0.757204
Target:  5'- -aCGUCuGCUGCcGCCGCGGCGgcagucGCGGg -3'
miRNA:   3'- uaGCAGcUGGUGaUGGCGUUGU------UGCC- -5'
11556 5' -52.1 NC_003085.1 + 22793 0.67 0.788109
Target:  5'- -gCGgcaaCGGCCGCUcCCGCccaggaGGCGACGGc -3'
miRNA:   3'- uaGCa---GCUGGUGAuGGCG------UUGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 25270 0.71 0.568825
Target:  5'- cGUCGUCGGCgCGCccgucuaccucACCGCGACGGcCGGc -3'
miRNA:   3'- -UAGCAGCUG-GUGa----------UGGCGUUGUU-GCC- -5'
11556 5' -52.1 NC_003085.1 + 16680 0.72 0.546737
Target:  5'- -cUGUCGACCuGCUACaCGCAG-GGCGGg -3'
miRNA:   3'- uaGCAGCUGG-UGAUG-GCGUUgUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 40009 0.72 0.51415
Target:  5'- -gCGUCGACCACggcCCGCuuCccguACGGg -3'
miRNA:   3'- uaGCAGCUGGUGau-GGCGuuGu---UGCC- -5'
11556 5' -52.1 NC_003085.1 + 35138 0.8 0.180918
Target:  5'- cAUUGUgGGCCgGCUGCCGCAACAugaGCGGc -3'
miRNA:   3'- -UAGCAgCUGG-UGAUGGCGUUGU---UGCC- -5'
11556 5' -52.1 NC_003085.1 + 26342 0.77 0.27797
Target:  5'- uUCGUCGACCagACgggauggaACCGCAcGCAGCGGa -3'
miRNA:   3'- uAGCAGCUGG--UGa-------UGGCGU-UGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 7558 0.75 0.375156
Target:  5'- -aCGUCGACC-UUGCCGCGGcCGAgGGg -3'
miRNA:   3'- uaGCAGCUGGuGAUGGCGUU-GUUgCC- -5'
11556 5' -52.1 NC_003085.1 + 11241 0.74 0.421911
Target:  5'- --gGUgGugCACUACCGCGGCAAgucCGGu -3'
miRNA:   3'- uagCAgCugGUGAUGGCGUUGUU---GCC- -5'
11556 5' -52.1 NC_003085.1 + 36165 0.74 0.421911
Target:  5'- gGUCGcCGACCGCUcGCCGCGAUucguACGc -3'
miRNA:   3'- -UAGCaGCUGGUGA-UGGCGUUGu---UGCc -5'
11556 5' -52.1 NC_003085.1 + 48298 0.74 0.441571
Target:  5'- cGUCGUaGGCC-CUACCGCAAgcgagucuCGGCGGa -3'
miRNA:   3'- -UAGCAgCUGGuGAUGGCGUU--------GUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 28226 0.73 0.49287
Target:  5'- -gUGUCGGCCAUgggUgGCGGCAGCGGu -3'
miRNA:   3'- uaGCAGCUGGUGau-GgCGUUGUUGCC- -5'
11556 5' -52.1 NC_003085.1 + 47710 0.73 0.49287
Target:  5'- aGUCGUCGACUGCUG-CGCcuGCuGACGGg -3'
miRNA:   3'- -UAGCAGCUGGUGAUgGCGu-UG-UUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.