miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11562 3' -64 NC_003085.1 + 28934 0.67 0.257606
Target:  5'- uCGGCagCGCCGCGgaagUCGgGCgGCGCg -3'
miRNA:   3'- uGCCG--GCGGCGCga--AGCgUGgCGCGg -5'
11562 3' -64 NC_003085.1 + 6009 0.67 0.257606
Target:  5'- uACGGCUGg-GCGCggauguaCGCccggacGCCGCGCCa -3'
miRNA:   3'- -UGCCGGCggCGCGaa-----GCG------UGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 37432 0.67 0.251393
Target:  5'- uGCGGCUaGCgaGCGCcaacccCGCGCC-CGCCa -3'
miRNA:   3'- -UGCCGG-CGg-CGCGaa----GCGUGGcGCGG- -5'
11562 3' -64 NC_003085.1 + 45986 0.67 0.250778
Target:  5'- cUGGCUGCCucucuggGCGCacacggCGaCACCuGCGCCu -3'
miRNA:   3'- uGCCGGCGG-------CGCGaa----GC-GUGG-CGCGG- -5'
11562 3' -64 NC_003085.1 + 23712 0.67 0.249553
Target:  5'- cGCGGCCuGCuCGCGCUgcugaaGCACCuucgagacuuccggGUGCa -3'
miRNA:   3'- -UGCCGG-CG-GCGCGAag----CGUGG--------------CGCGg -5'
11562 3' -64 NC_003085.1 + 24538 0.67 0.245304
Target:  5'- gUGGUCGCgGUGCgu-GCGCgGCGCg -3'
miRNA:   3'- uGCCGGCGgCGCGaagCGUGgCGCGg -5'
11562 3' -64 NC_003085.1 + 41559 0.67 0.245304
Target:  5'- -gGGCCGguagcaGCGCUggCGCGguacuucacCCGCGCCc -3'
miRNA:   3'- ugCCGGCgg----CGCGAa-GCGU---------GGCGCGG- -5'
11562 3' -64 NC_003085.1 + 11396 0.67 0.245304
Target:  5'- aGCGcuaCCGCCG-GCUgaCGCACCGcCGCg -3'
miRNA:   3'- -UGCc--GGCGGCgCGAa-GCGUGGC-GCGg -5'
11562 3' -64 NC_003085.1 + 7121 0.67 0.245304
Target:  5'- gACGGUcacgCGCCG-GCUggUGaCACCGCaGCCg -3'
miRNA:   3'- -UGCCG----GCGGCgCGAa-GC-GUGGCG-CGG- -5'
11562 3' -64 NC_003085.1 + 19766 0.67 0.245304
Target:  5'- aGauGCCGCCGCGCgccuccaGgGCCGCcaggaggucGCCg -3'
miRNA:   3'- -UgcCGGCGGCGCGaag----CgUGGCG---------CGG- -5'
11562 3' -64 NC_003085.1 + 12384 0.67 0.244702
Target:  5'- -gGGUCGgUGUGCgcCGCaacccagcggaccACCGCGCCg -3'
miRNA:   3'- ugCCGGCgGCGCGaaGCG-------------UGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 39723 0.67 0.239338
Target:  5'- cGCGcGCCGCUcgGUGUcgUCGCGaagUUGCGCCa -3'
miRNA:   3'- -UGC-CGGCGG--CGCGa-AGCGU---GGCGCGG- -5'
11562 3' -64 NC_003085.1 + 42534 0.67 0.239338
Target:  5'- gUGGCCuCC-CGCUUCGCcucgGCCaGCGCg -3'
miRNA:   3'- uGCCGGcGGcGCGAAGCG----UGG-CGCGg -5'
11562 3' -64 NC_003085.1 + 39955 0.67 0.239338
Target:  5'- gAUGacCCGCCGCGCgccgccaUCGuCACCGCGaCg -3'
miRNA:   3'- -UGCc-GGCGGCGCGa------AGC-GUGGCGCgG- -5'
11562 3' -64 NC_003085.1 + 30231 0.67 0.239338
Target:  5'- aAUGGCCcUgGCGCaggccUUGCGCgGCGCCc -3'
miRNA:   3'- -UGCCGGcGgCGCGa----AGCGUGgCGCGG- -5'
11562 3' -64 NC_003085.1 + 19919 0.67 0.239338
Target:  5'- cACGuCCuGCCGCaCgaCGC-CCGCGCCa -3'
miRNA:   3'- -UGCcGG-CGGCGcGaaGCGuGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 8855 0.67 0.239338
Target:  5'- gGCGGCCaugaCGUGCaUCGgcauccacguCACCGCGUCu -3'
miRNA:   3'- -UGCCGGcg--GCGCGaAGC----------GUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 8602 0.67 0.239338
Target:  5'- cAUGGCgucaCCGC-CUUCGC-CUGCGCCc -3'
miRNA:   3'- -UGCCGgc--GGCGcGAAGCGuGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 22193 0.67 0.239338
Target:  5'- cCGGCUGCUGCG----GCGCCGgGCUc -3'
miRNA:   3'- uGCCGGCGGCGCgaagCGUGGCgCGG- -5'
11562 3' -64 NC_003085.1 + 21699 0.67 0.239338
Target:  5'- -aGGUgGCC-CGCUUCGCcucggacauCCaGCGCCu -3'
miRNA:   3'- ugCCGgCGGcGCGAAGCGu--------GG-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.