miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11562 3' -64 NC_003085.1 + 4246 0.75 0.067672
Target:  5'- -gGGCCGCaGCGCUUCGCG-CGCuugGCCu -3'
miRNA:   3'- ugCCGGCGgCGCGAAGCGUgGCG---CGG- -5'
11562 3' -64 NC_003085.1 + 4302 0.7 0.163673
Target:  5'- uGCGGCCcgGCUGaCGCUcagCGUaacccGCCGCGCg -3'
miRNA:   3'- -UGCCGG--CGGC-GCGAa--GCG-----UGGCGCGg -5'
11562 3' -64 NC_003085.1 + 5226 0.75 0.06955
Target:  5'- gAUGGCCGCUGC-CUUCGCGUCG-GCCu -3'
miRNA:   3'- -UGCCGGCGGCGcGAAGCGUGGCgCGG- -5'
11562 3' -64 NC_003085.1 + 5254 0.67 0.239338
Target:  5'- cACGG-CGCCGCcCU--GCcuuCCGCGCCa -3'
miRNA:   3'- -UGCCgGCGGCGcGAagCGu--GGCGCGG- -5'
11562 3' -64 NC_003085.1 + 5401 0.69 0.186152
Target:  5'- cGCGGCCa-CGCGCUucucggUCGCcuucaggacgGCgCGCGCCu -3'
miRNA:   3'- -UGCCGGcgGCGCGA------AGCG----------UG-GCGCGG- -5'
11562 3' -64 NC_003085.1 + 5632 0.68 0.206054
Target:  5'- -gGGCUGCUggaGCGCUcgcccugugacUUGCGCgaGCGCCg -3'
miRNA:   3'- ugCCGGCGG---CGCGA-----------AGCGUGg-CGCGG- -5'
11562 3' -64 NC_003085.1 + 6009 0.67 0.257606
Target:  5'- uACGGCUGg-GCGCggauguaCGCccggacGCCGCGCCa -3'
miRNA:   3'- -UGCCGGCggCGCGaa-----GCG------UGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 6704 0.73 0.084172
Target:  5'- uGCGGCCGCCcUGCacCGCACCcaugcCGCCg -3'
miRNA:   3'- -UGCCGGCGGcGCGaaGCGUGGc----GCGG- -5'
11562 3' -64 NC_003085.1 + 6756 0.66 0.270407
Target:  5'- cCGGCCuGCCGCGCcguggCGgACgGCgagaGCCc -3'
miRNA:   3'- uGCCGG-CGGCGCGaa---GCgUGgCG----CGG- -5'
11562 3' -64 NC_003085.1 + 7121 0.67 0.245304
Target:  5'- gACGGUcacgCGCCG-GCUggUGaCACCGCaGCCg -3'
miRNA:   3'- -UGCCG----GCGGCgCGAa-GC-GUGGCG-CGG- -5'
11562 3' -64 NC_003085.1 + 7305 0.67 0.239338
Target:  5'- -gGGCUGuCCGUagggGCa--GCGCUGCGCCa -3'
miRNA:   3'- ugCCGGC-GGCG----CGaagCGUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 7334 0.68 0.216679
Target:  5'- gGCGGCUGaggaCGCggGCUacaCGCGCCccuggGCGCCg -3'
miRNA:   3'- -UGCCGGCg---GCG--CGAa--GCGUGG-----CGCGG- -5'
11562 3' -64 NC_003085.1 + 7450 0.7 0.147479
Target:  5'- cGCGGgCGCCGUcgGCcUCGUACUggagcgGCGCCc -3'
miRNA:   3'- -UGCCgGCGGCG--CGaAGCGUGG------CGCGG- -5'
11562 3' -64 NC_003085.1 + 7983 0.66 0.290562
Target:  5'- cAC-GCCGacaggaCGCGC-UCGCcCCGaCGCCa -3'
miRNA:   3'- -UGcCGGCg-----GCGCGaAGCGuGGC-GCGG- -5'
11562 3' -64 NC_003085.1 + 8484 0.66 0.276998
Target:  5'- -aGGCCGCCgagGCGCUggccCGCcaguacgaCGCGCa -3'
miRNA:   3'- ugCCGGCGG---CGCGAa---GCGug------GCGCGg -5'
11562 3' -64 NC_003085.1 + 8602 0.67 0.239338
Target:  5'- cAUGGCgucaCCGC-CUUCGC-CUGCGCCc -3'
miRNA:   3'- -UGCCGgc--GGCGcGAAGCGuGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 8855 0.67 0.239338
Target:  5'- gGCGGCCaugaCGUGCaUCGgcauccacguCACCGCGUCu -3'
miRNA:   3'- -UGCCGGcg--GCGCGaAGC----------GUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 9285 0.66 0.289872
Target:  5'- cGCGGCuuccCGCgGCGaacacagggCGCAggaguacCCGCGCCg -3'
miRNA:   3'- -UGCCG----GCGgCGCgaa------GCGU-------GGCGCGG- -5'
11562 3' -64 NC_003085.1 + 9573 0.7 0.155385
Target:  5'- uUGGCCuGCCGcCGCcgaGCACCgGCGUCu -3'
miRNA:   3'- uGCCGG-CGGC-GCGaagCGUGG-CGCGG- -5'
11562 3' -64 NC_003085.1 + 9670 0.69 0.190963
Target:  5'- gACGGCCGCCaaCGUcgaGCACCG-GCUg -3'
miRNA:   3'- -UGCCGGCGGc-GCGaagCGUGGCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.