miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11562 3' -64 NC_003085.1 + 397 0.68 0.21886
Target:  5'- uACGGCaagCGCCuGCGCUcccuggacgccagucUCG-GCCGCGUCu -3'
miRNA:   3'- -UGCCG---GCGG-CGCGA---------------AGCgUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 820 0.69 0.186152
Target:  5'- cGCGuGCCGCCgcaggucgucgaGCGCgucucucacgUCGCGCUGC-CCg -3'
miRNA:   3'- -UGC-CGGCGG------------CGCGa---------AGCGUGGCGcGG- -5'
11562 3' -64 NC_003085.1 + 881 0.66 0.304641
Target:  5'- uGCGGCgGCaCGCGgacgUC-CACCGUgGCCu -3'
miRNA:   3'- -UGCCGgCG-GCGCga--AGcGUGGCG-CGG- -5'
11562 3' -64 NC_003085.1 + 1521 0.7 0.143288
Target:  5'- cACGGCCGCCaggcgugacuccaGCGUcugcugUCGCgagGCCGUGCg -3'
miRNA:   3'- -UGCCGGCGG-------------CGCGa-----AGCG---UGGCGCGg -5'
11562 3' -64 NC_003085.1 + 1576 0.7 0.15948
Target:  5'- uGCaGuuGCgGCGCggCGUACgCGUGCCg -3'
miRNA:   3'- -UGcCggCGgCGCGaaGCGUG-GCGCGG- -5'
11562 3' -64 NC_003085.1 + 1581 0.74 0.081917
Target:  5'- cUGGCgGCCGUGaggCGCACCG-GCCg -3'
miRNA:   3'- uGCCGgCGGCGCgaaGCGUGGCgCGG- -5'
11562 3' -64 NC_003085.1 + 1680 0.72 0.108461
Target:  5'- gUGGCUGCCGUGCgucuccucaUGCacacggcacgcguacGCCGCGCCg -3'
miRNA:   3'- uGCCGGCGGCGCGaa-------GCG---------------UGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 2094 0.69 0.172356
Target:  5'- cGCaGCCGCCGCaCcUCgGCGCCaucgGCGCCc -3'
miRNA:   3'- -UGcCGGCGGCGcGaAG-CGUGG----CGCGG- -5'
11562 3' -64 NC_003085.1 + 2155 0.77 0.044625
Target:  5'- uGCGGCgGCUGCGCUcgUCGCGucaccguCCGgGCCu -3'
miRNA:   3'- -UGCCGgCGGCGCGA--AGCGU-------GGCgCGG- -5'
11562 3' -64 NC_003085.1 + 2373 0.66 0.304641
Target:  5'- -aGGCCGCgGCGCgcgagcucUCGCAgguacuCCcuuugggguucgGCGCCu -3'
miRNA:   3'- ugCCGGCGgCGCGa-------AGCGU------GG------------CGCGG- -5'
11562 3' -64 NC_003085.1 + 2388 0.68 0.209193
Target:  5'- aGCGGCgGCCGgugGCgaggcaggccaGCGCCGUGCUg -3'
miRNA:   3'- -UGCCGgCGGCg--CGaag--------CGUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 2436 0.77 0.042333
Target:  5'- cGCGcGCCGCgGC-C-UCGCACUGCGCCu -3'
miRNA:   3'- -UGC-CGGCGgCGcGaAGCGUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 2562 0.68 0.200912
Target:  5'- uGCGGCUGaaGCGC--CGCGCUGaugGCCa -3'
miRNA:   3'- -UGCCGGCggCGCGaaGCGUGGCg--CGG- -5'
11562 3' -64 NC_003085.1 + 3565 0.7 0.163673
Target:  5'- -aGGCgGCCGgGCggcaagCGCGCCuCGCUg -3'
miRNA:   3'- ugCCGgCGGCgCGaa----GCGUGGcGCGG- -5'
11562 3' -64 NC_003085.1 + 3646 0.66 0.283716
Target:  5'- uCGGCagcgaGgCGCGCUUgCGC-CCG-GCCg -3'
miRNA:   3'- uGCCGg----CgGCGCGAA-GCGuGGCgCGG- -5'
11562 3' -64 NC_003085.1 + 3796 0.66 0.270407
Target:  5'- gACGGUcaugcugaCGCCucGCGUggcacgUCGCGCUGCGUg -3'
miRNA:   3'- -UGCCG--------GCGG--CGCGa-----AGCGUGGCGCGg -5'
11562 3' -64 NC_003085.1 + 3863 0.68 0.200912
Target:  5'- cACGGCgCGUCGaCGg--CGCGCC-CGCCg -3'
miRNA:   3'- -UGCCG-GCGGC-GCgaaGCGUGGcGCGG- -5'
11562 3' -64 NC_003085.1 + 3939 0.72 0.101697
Target:  5'- gACGGCgGgCGCGCcgUCGa--CGCGCCg -3'
miRNA:   3'- -UGCCGgCgGCGCGa-AGCgugGCGCGG- -5'
11562 3' -64 NC_003085.1 + 4027 0.69 0.190963
Target:  5'- uUGGUggUGCCGUGaCgaCGcCACCGCGCCc -3'
miRNA:   3'- uGCCG--GCGGCGC-GaaGC-GUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 4116 0.71 0.129295
Target:  5'- uUGGgCGCCGCGCUggGacuCCaGCGCCg -3'
miRNA:   3'- uGCCgGCGGCGCGAagCgu-GG-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.