miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11562 3' -64 NC_003085.1 + 46670 0.71 0.136306
Target:  5'- gGCGcuucGCCGCCGC-CUggaGCGCCGcCGCUg -3'
miRNA:   3'- -UGC----CGGCGGCGcGAag-CGUGGC-GCGG- -5'
11562 3' -64 NC_003085.1 + 14273 0.72 0.098997
Target:  5'- uGCGGCCagGCUGCuGCcgUCaaGCGCCGCGCa -3'
miRNA:   3'- -UGCCGG--CGGCG-CGa-AG--CGUGGCGCGg -5'
11562 3' -64 NC_003085.1 + 16233 0.72 0.101697
Target:  5'- cGCGGCUGgCGuCGUcauccUCGUGCUGCGCCg -3'
miRNA:   3'- -UGCCGGCgGC-GCGa----AGCGUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 12421 0.72 0.107305
Target:  5'- -gGGCCGCUGCGCUcCGaggagGCUGUGUCg -3'
miRNA:   3'- ugCCGGCGGCGCGAaGCg----UGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 29751 0.71 0.120679
Target:  5'- gUGGCCGCCGuCGCgccccaccucgugCGCACUG-GCCc -3'
miRNA:   3'- uGCCGGCGGC-GCGaa-----------GCGUGGCgCGG- -5'
11562 3' -64 NC_003085.1 + 30339 0.71 0.125916
Target:  5'- gGCGGaCGCUGuCGCggggCGCACUGCGgCg -3'
miRNA:   3'- -UGCCgGCGGC-GCGaa--GCGUGGCGCgG- -5'
11562 3' -64 NC_003085.1 + 36162 0.71 0.125916
Target:  5'- gAUGGUCGCCGacCGCUcgccgcgauucgUaCGCACCGCGUg -3'
miRNA:   3'- -UGCCGGCGGC--GCGA------------A-GCGUGGCGCGg -5'
11562 3' -64 NC_003085.1 + 4116 0.71 0.129295
Target:  5'- uUGGgCGCCGCGCUggGacuCCaGCGCCg -3'
miRNA:   3'- uGCCgGCGGCGCGAagCgu-GG-CGCGG- -5'
11562 3' -64 NC_003085.1 + 16175 0.71 0.136306
Target:  5'- gUGGUgGCCGCGCUgguUCGaggugaGCCGUGaCCg -3'
miRNA:   3'- uGCCGgCGGCGCGA---AGCg-----UGGCGC-GG- -5'
11562 3' -64 NC_003085.1 + 22726 0.73 0.096366
Target:  5'- gGCGGCUGCCGagaagcacucgGCUcCGaCAcCCGCGCCg -3'
miRNA:   3'- -UGCCGGCGGCg----------CGAaGC-GU-GGCGCGG- -5'
11562 3' -64 NC_003085.1 + 13912 0.73 0.096366
Target:  5'- uGCGGCgUGCgCGCGUUUCGgACggggcgCGCGCCg -3'
miRNA:   3'- -UGCCG-GCG-GCGCGAAGCgUG------GCGCGG- -5'
11562 3' -64 NC_003085.1 + 14921 0.73 0.091053
Target:  5'- cCGGCCGCCaGCGCguggCGCuccaacucgcggaACUGCGCg -3'
miRNA:   3'- uGCCGGCGG-CGCGaa--GCG-------------UGGCGCGg -5'
11562 3' -64 NC_003085.1 + 20756 0.79 0.029468
Target:  5'- cCGGCUGCUGCccgGCUUCGgGCUGUGCCg -3'
miRNA:   3'- uGCCGGCGGCG---CGAAGCgUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 15181 0.77 0.041059
Target:  5'- gACGGCCcggcugaGCCgGUGCgccaGCGCCGCGCCg -3'
miRNA:   3'- -UGCCGG-------CGG-CGCGaag-CGUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 44967 0.77 0.043524
Target:  5'- uUGGCCcagucGCCagcGCGCUUCGuCACCGUGCCc -3'
miRNA:   3'- uGCCGG-----CGG---CGCGAAGC-GUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 21825 0.76 0.049577
Target:  5'- -aGGCCGCCgagcucaucaagucGCGCUUCuccauGUACCGCGUCg -3'
miRNA:   3'- ugCCGGCGG--------------CGCGAAG-----CGUGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 40625 0.76 0.055828
Target:  5'- gACGGCCGCUGcCGUccucgUCGCccugacgcugGCUGCGCCg -3'
miRNA:   3'- -UGCCGGCGGC-GCGa----AGCG----------UGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 4246 0.75 0.067672
Target:  5'- -gGGCCGCaGCGCUUCGCG-CGCuugGCCu -3'
miRNA:   3'- ugCCGGCGgCGCGAAGCGUgGCG---CGG- -5'
11562 3' -64 NC_003085.1 + 6704 0.73 0.084172
Target:  5'- uGCGGCCGCCcUGCacCGCACCcaugcCGCCg -3'
miRNA:   3'- -UGCCGGCGGcGCGaaGCGUGGc----GCGG- -5'
11562 3' -64 NC_003085.1 + 48905 0.73 0.086487
Target:  5'- --cGCCaGCCGCGCcgccUCGCGCCGUucGCCa -3'
miRNA:   3'- ugcCGG-CGGCGCGa---AGCGUGGCG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.