miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11562 3' -64 NC_003085.1 + 28856 0.66 0.276998
Target:  5'- cCGcGCCGCC-CGaCUUcCGCGgCGCuGCCg -3'
miRNA:   3'- uGC-CGGCGGcGC-GAA-GCGUgGCG-CGG- -5'
11562 3' -64 NC_003085.1 + 8484 0.66 0.276998
Target:  5'- -aGGCCGCCgagGCGCUggccCGCcaguacgaCGCGCa -3'
miRNA:   3'- ugCCGGCGG---CGCGAa---GCGug------GCGCGg -5'
11562 3' -64 NC_003085.1 + 20289 0.66 0.276998
Target:  5'- gGCGaaGCCcaagGCCGUGCccaaCGCGCC-CGCCa -3'
miRNA:   3'- -UGC--CGG----CGGCGCGaa--GCGUGGcGCGG- -5'
11562 3' -64 NC_003085.1 + 881 0.66 0.304641
Target:  5'- uGCGGCgGCaCGCGgacgUC-CACCGUgGCCu -3'
miRNA:   3'- -UGCCGgCG-GCGCga--AGcGUGGCG-CGG- -5'
11562 3' -64 NC_003085.1 + 24707 0.66 0.290562
Target:  5'- gACGGCgGCaucgGCgGCUUCGCGg-GUGCCa -3'
miRNA:   3'- -UGCCGgCGg---CG-CGAAGCGUggCGCGG- -5'
11562 3' -64 NC_003085.1 + 45208 0.66 0.290562
Target:  5'- gACGGaCGUCGUGUuucUUCGCcCaCGCGUCg -3'
miRNA:   3'- -UGCCgGCGGCGCG---AAGCGuG-GCGCGG- -5'
11562 3' -64 NC_003085.1 + 41850 0.66 0.290562
Target:  5'- ---cCCGCCcgGCGCUgguccaccUCGCGgUGCGCCg -3'
miRNA:   3'- ugccGGCGG--CGCGA--------AGCGUgGCGCGG- -5'
11562 3' -64 NC_003085.1 + 47524 0.66 0.275007
Target:  5'- uACGGCCaccgggaccgacgaGCC-CGCgagcgaugCGCAgCGCGCUg -3'
miRNA:   3'- -UGCCGG--------------CGGcGCGaa------GCGUgGCGCGG- -5'
11562 3' -64 NC_003085.1 + 25471 0.66 0.293337
Target:  5'- uCGGCCGCCGCuCUUCuuCACCcagggagaaucccauGCGUg -3'
miRNA:   3'- uGCCGGCGGCGcGAAGc-GUGG---------------CGCGg -5'
11562 3' -64 NC_003085.1 + 6756 0.66 0.270407
Target:  5'- cCGGCCuGCCGCGCcguggCGgACgGCgagaGCCc -3'
miRNA:   3'- uGCCGG-CGGCGCGaa---GCgUGgCG----CGG- -5'
11562 3' -64 NC_003085.1 + 19993 0.66 0.276998
Target:  5'- uACGGCCcuGCCGcCGUcgUCGUgggGCCGCaacucaGCCu -3'
miRNA:   3'- -UGCCGG--CGGC-GCGa-AGCG---UGGCG------CGG- -5'
11562 3' -64 NC_003085.1 + 21595 0.66 0.297537
Target:  5'- cAUGGCCGacaucaUGCGUggCGCGagcgacCCGCGCg -3'
miRNA:   3'- -UGCCGGCg-----GCGCGaaGCGU------GGCGCGg -5'
11562 3' -64 NC_003085.1 + 2373 0.66 0.304641
Target:  5'- -aGGCCGCgGCGCgcgagcucUCGCAgguacuCCcuuugggguucgGCGCCu -3'
miRNA:   3'- ugCCGGCGgCGCGa-------AGCGU------GG------------CGCGG- -5'
11562 3' -64 NC_003085.1 + 31620 0.66 0.304641
Target:  5'- cCGGCCGCgGgGCcugaagUCGUGCCugaGCCc -3'
miRNA:   3'- uGCCGGCGgCgCGa-----AGCGUGGcg-CGG- -5'
11562 3' -64 NC_003085.1 + 27708 0.66 0.270407
Target:  5'- gGCGuCCGCC-CGCUgUCGCGCCuCGUUg -3'
miRNA:   3'- -UGCcGGCGGcGCGA-AGCGUGGcGCGG- -5'
11562 3' -64 NC_003085.1 + 37048 0.66 0.270407
Target:  5'- cCGGCCuguaCCGCGCUg-GCGCCGaCGaCg -3'
miRNA:   3'- uGCCGGc---GGCGCGAagCGUGGC-GCgG- -5'
11562 3' -64 NC_003085.1 + 16464 0.66 0.300363
Target:  5'- gACGGCaguguccgaccugcgCGCCGC-CUucccgUCGCugACgGCGCCg -3'
miRNA:   3'- -UGCCG---------------GCGGCGcGA-----AGCG--UGgCGCGG- -5'
11562 3' -64 NC_003085.1 + 44381 0.66 0.270407
Target:  5'- cACuGUCGCuCGgGCUguUCGUcaucCCGCGCCg -3'
miRNA:   3'- -UGcCGGCG-GCgCGA--AGCGu---GGCGCGG- -5'
11562 3' -64 NC_003085.1 + 37230 0.66 0.297537
Target:  5'- gGCGGCCcagccGCCGCGCUcaagGCAg-GCGUCg -3'
miRNA:   3'- -UGCCGG-----CGGCGCGAag--CGUggCGCGG- -5'
11562 3' -64 NC_003085.1 + 10482 0.66 0.279669
Target:  5'- cUGGCCgaccuGCUGCGCggCGCACUggagaauccgcggaaGCGCa -3'
miRNA:   3'- uGCCGG-----CGGCGCGaaGCGUGG---------------CGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.