miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11567 5' -61.6 NC_003085.1 + 25006 1.09 0.000219
Target:  5'- gUCCGCGGUGCAGAAGGCGCCGCUGGGc -3'
miRNA:   3'- -AGGCGCCACGUCUUCCGCGGCGACCC- -5'
11567 5' -61.6 NC_003085.1 + 34564 0.79 0.044534
Target:  5'- gUCCGUGGUGCccuGGGAGGCGCCcCaGGGc -3'
miRNA:   3'- -AGGCGCCACG---UCUUCCGCGGcGaCCC- -5'
11567 5' -61.6 NC_003085.1 + 10418 0.79 0.045808
Target:  5'- gUCCGCGGUGCcucccGGGAGGCGaCGUggcgGGGg -3'
miRNA:   3'- -AGGCGCCACG-----UCUUCCGCgGCGa---CCC- -5'
11567 5' -61.6 NC_003085.1 + 5181 0.74 0.114435
Target:  5'- -gCGCGGaagGCAGGGcGGCGCCG-UGGGu -3'
miRNA:   3'- agGCGCCa--CGUCUU-CCGCGGCgACCC- -5'
11567 5' -61.6 NC_003085.1 + 5618 0.72 0.141948
Target:  5'- -aCGCGGUGguGGAcGG-GCUGCUGGa -3'
miRNA:   3'- agGCGCCACguCUU-CCgCGGCGACCc -5'
11567 5' -61.6 NC_003085.1 + 6772 0.72 0.141948
Target:  5'- -gUGCGGUGCAGGGcGGCcgcaaGCCGCUccaGGGc -3'
miRNA:   3'- agGCGCCACGUCUU-CCG-----CGGCGA---CCC- -5'
11567 5' -61.6 NC_003085.1 + 949 0.71 0.175393
Target:  5'- gUCCG-GGUGcCAGAcAGGcCGCUGCcGGGg -3'
miRNA:   3'- -AGGCgCCAC-GUCU-UCC-GCGGCGaCCC- -5'
11567 5' -61.6 NC_003085.1 + 36964 0.7 0.194624
Target:  5'- gCCGCGGgGCcauGuuGGCGCCGCUucgacuccagcaGGGc -3'
miRNA:   3'- aGGCGCCaCGu--CuuCCGCGGCGA------------CCC- -5'
11567 5' -61.6 NC_003085.1 + 40704 0.7 0.199712
Target:  5'- gUCCG-GGUGCuGGAcGCGCCGgUGGa -3'
miRNA:   3'- -AGGCgCCACGuCUUcCGCGGCgACCc -5'
11567 5' -61.6 NC_003085.1 + 19056 0.7 0.215675
Target:  5'- uUCCGCGGcgcgcgGCGGAgcAGGCGCCGggcccGGa -3'
miRNA:   3'- -AGGCGCCa-----CGUCU--UCCGCGGCga---CCc -5'
11567 5' -61.6 NC_003085.1 + 27617 0.69 0.226915
Target:  5'- -gCGCGGUGUguggagccuGGggGGCucGCCGCcagcGGGa -3'
miRNA:   3'- agGCGCCACG---------UCuuCCG--CGGCGa---CCC- -5'
11567 5' -61.6 NC_003085.1 + 25770 0.69 0.232719
Target:  5'- cUCGCGGgcaaguccgacgUGCAGGugGGGaCGCCGCUGaaGGa -3'
miRNA:   3'- aGGCGCC------------ACGUCU--UCC-GCGGCGAC--CC- -5'
11567 5' -61.6 NC_003085.1 + 32126 0.69 0.232719
Target:  5'- cUCgGUGGUGCGacGGGgGCgGCUGGu -3'
miRNA:   3'- -AGgCGCCACGUcuUCCgCGgCGACCc -5'
11567 5' -61.6 NC_003085.1 + 28800 0.69 0.238647
Target:  5'- gUUGCGGcGC-GAGGaGUGCCGCUGGc -3'
miRNA:   3'- aGGCGCCaCGuCUUC-CGCGGCGACCc -5'
11567 5' -61.6 NC_003085.1 + 46917 0.69 0.244701
Target:  5'- aCCGCGGcagGCGGcacagguucGGCGCgCGCaGGGg -3'
miRNA:   3'- aGGCGCCa--CGUCuu-------CCGCG-GCGaCCC- -5'
11567 5' -61.6 NC_003085.1 + 38617 0.69 0.244701
Target:  5'- aCCGCcGUGCucgucGGGacgcucaaGCCGCUGGGg -3'
miRNA:   3'- aGGCGcCACGucu--UCCg-------CGGCGACCC- -5'
11567 5' -61.6 NC_003085.1 + 42727 0.69 0.244701
Target:  5'- aCgGCGGUGCAGuggcuaugGAGGUGgCGCgacgacgagGGGa -3'
miRNA:   3'- aGgCGCCACGUC--------UUCCGCgGCGa--------CCC- -5'
11567 5' -61.6 NC_003085.1 + 10456 0.69 0.250881
Target:  5'- cUCCGCGGcGCuuu-GGCGCCccucgGCUGGc -3'
miRNA:   3'- -AGGCGCCaCGucuuCCGCGG-----CGACCc -5'
11567 5' -61.6 NC_003085.1 + 30334 0.69 0.250881
Target:  5'- gUCCGCcuGGggcgGCGGGggcuGGGCGCCGCgcaaGGc -3'
miRNA:   3'- -AGGCG--CCa---CGUCU----UCCGCGGCGa---CCc -5'
11567 5' -61.6 NC_003085.1 + 4106 0.68 0.263629
Target:  5'- gCCGCuGGaGUu--GGGCGCCGCgcUGGGa -3'
miRNA:   3'- aGGCG-CCaCGucuUCCGCGGCG--ACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.