miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11567 5' -61.6 NC_003085.1 + 591 0.67 0.319886
Target:  5'- gCCGCagGGUGUcucGAcuGGCGCCGUccUGGGc -3'
miRNA:   3'- aGGCG--CCACGu--CUu-CCGCGGCG--ACCC- -5'
11567 5' -61.6 NC_003085.1 + 949 0.71 0.175393
Target:  5'- gUCCG-GGUGcCAGAcAGGcCGCUGCcGGGg -3'
miRNA:   3'- -AGGCgCCAC-GUCU-UCC-GCGGCGaCCC- -5'
11567 5' -61.6 NC_003085.1 + 3091 0.67 0.312387
Target:  5'- aCCGCucccGCGGAAGGCGCgGCUuGaGGc -3'
miRNA:   3'- aGGCGcca-CGUCUUCCGCGgCGA-C-CC- -5'
11567 5' -61.6 NC_003085.1 + 4106 0.68 0.263629
Target:  5'- gCCGCuGGaGUu--GGGCGCCGCgcUGGGa -3'
miRNA:   3'- aGGCG-CCaCGucuUCCGCGGCG--ACCC- -5'
11567 5' -61.6 NC_003085.1 + 4170 0.66 0.373575
Target:  5'- cUCCGCgagacagguguugaGGUggaGCAGAcgcAGGaCGCCGCUGa- -3'
miRNA:   3'- -AGGCG--------------CCA---CGUCU---UCC-GCGGCGACcc -5'
11567 5' -61.6 NC_003085.1 + 5181 0.74 0.114435
Target:  5'- -gCGCGGaagGCAGGGcGGCGCCG-UGGGu -3'
miRNA:   3'- agGCGCCa--CGUCUU-CCGCGGCgACCC- -5'
11567 5' -61.6 NC_003085.1 + 5618 0.72 0.141948
Target:  5'- -aCGCGGUGguGGAcGG-GCUGCUGGa -3'
miRNA:   3'- agGCGCCACguCUU-CCgCGGCGACCc -5'
11567 5' -61.6 NC_003085.1 + 6772 0.72 0.141948
Target:  5'- -gUGCGGUGCAGGGcGGCcgcaaGCCGCUccaGGGc -3'
miRNA:   3'- agGCGCCACGUCUU-CCG-----CGGCGA---CCC- -5'
11567 5' -61.6 NC_003085.1 + 7094 0.66 0.384677
Target:  5'- cCCGCGcGaggGCcuuGAGGGCGCCGgUGa- -3'
miRNA:   3'- aGGCGC-Ca--CGu--CUUCCGCGGCgACcc -5'
11567 5' -61.6 NC_003085.1 + 10267 0.66 0.359389
Target:  5'- cCCGCGGgugaGCAGGucGCGCauugcaGCcGGGu -3'
miRNA:   3'- aGGCGCCa---CGUCUucCGCGg-----CGaCCC- -5'
11567 5' -61.6 NC_003085.1 + 10418 0.79 0.045808
Target:  5'- gUCCGCGGUGCcucccGGGAGGCGaCGUggcgGGGg -3'
miRNA:   3'- -AGGCGCCACG-----UCUUCCGCgGCGa---CCC- -5'
11567 5' -61.6 NC_003085.1 + 10456 0.69 0.250881
Target:  5'- cUCCGCGGcGCuuu-GGCGCCccucgGCUGGc -3'
miRNA:   3'- -AGGCGCCaCGucuuCCGCGG-----CGACCc -5'
11567 5' -61.6 NC_003085.1 + 12536 0.68 0.283729
Target:  5'- aUCGCG--GCAGAGGGaugccacccgcCGCCGCUGGc -3'
miRNA:   3'- aGGCGCcaCGUCUUCC-----------GCGGCGACCc -5'
11567 5' -61.6 NC_003085.1 + 14201 0.66 0.393364
Target:  5'- aCCGCGG-GCAGcacGGUgauGCCGUggcagUGGGc -3'
miRNA:   3'- aGGCGCCaCGUCuu-CCG---CGGCG-----ACCC- -5'
11567 5' -61.6 NC_003085.1 + 15271 0.68 0.297791
Target:  5'- uUCCGCGGcGCGGcgcuGGCGCaccggcucaGCcGGGc -3'
miRNA:   3'- -AGGCGCCaCGUCuu--CCGCGg--------CGaCCC- -5'
11567 5' -61.6 NC_003085.1 + 17822 0.67 0.305022
Target:  5'- gCCGCcuGUGCGGcAGGC-CC-CUGGGg -3'
miRNA:   3'- aGGCGc-CACGUCuUCCGcGGcGACCC- -5'
11567 5' -61.6 NC_003085.1 + 17939 0.68 0.283729
Target:  5'- -gCGCGGcGCucuGGGCuCUGCUGGGg -3'
miRNA:   3'- agGCGCCaCGucuUCCGcGGCGACCC- -5'
11567 5' -61.6 NC_003085.1 + 19056 0.7 0.215675
Target:  5'- uUCCGCGGcgcgcgGCGGAgcAGGCGCCGggcccGGa -3'
miRNA:   3'- -AGGCGCCa-----CGUCU--UCCGCGGCga---CCc -5'
11567 5' -61.6 NC_003085.1 + 23058 0.67 0.305022
Target:  5'- gCCGCcggaGGUGCAGAAGGaagucacUCGCaGGGa -3'
miRNA:   3'- aGGCG----CCACGUCUUCCgc-----GGCGaCCC- -5'
11567 5' -61.6 NC_003085.1 + 23309 0.68 0.297791
Target:  5'- -gCGCGGUGC-GAAgcgcGGCgGCCGuCUGGa -3'
miRNA:   3'- agGCGCCACGuCUU----CCG-CGGC-GACCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.