Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11572 | 3' | -61 | NC_003085.1 | + | 26372 | 1.08 | 0.000265 |
Target: 5'- cAGCGGAUGCCGUUGCUCGGGCCGCUGa -3' miRNA: 3'- -UCGCCUACGGCAACGAGCCCGGCGAC- -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 12393 | 0.77 | 0.059318 |
Target: 5'- gGGcCGGGUGCUGcUGCUCgacccggcgGGGCCGCUGc -3' miRNA: 3'- -UC-GCCUACGGCaACGAG---------CCCGGCGAC- -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 44943 | 0.75 | 0.093039 |
Target: 5'- uGCGGAUGCgGUUGCgaGGGCC-CUGc -3' miRNA: 3'- uCGCCUACGgCAACGagCCCGGcGAC- -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 34620 | 0.74 | 0.103969 |
Target: 5'- cGCGGGccgGCUGguggcGCUCGcGGCCGCUGu -3' miRNA: 3'- uCGCCUa--CGGCaa---CGAGC-CCGGCGAC- -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 10734 | 0.72 | 0.148356 |
Target: 5'- aAGCGGAcGCUGUUGCUguccggccacaCGGGCgccgggaagaCGCUGg -3' miRNA: 3'- -UCGCCUaCGGCAACGA-----------GCCCG----------GCGAC- -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 30044 | 0.72 | 0.156557 |
Target: 5'- cGGUGGAUGaCUGcUUGCcggaGGGCUGCUGg -3' miRNA: 3'- -UCGCCUAC-GGC-AACGag--CCCGGCGAC- -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 40493 | 0.71 | 0.16963 |
Target: 5'- uGGCGGgcGUCGUcgaGC-CGGaGCCGCUGa -3' miRNA: 3'- -UCGCCuaCGGCAa--CGaGCC-CGGCGAC- -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 6967 | 0.7 | 0.193592 |
Target: 5'- cAGC-GAUGCCcucuccGUUGCUCcGGCCGCUu -3' miRNA: 3'- -UCGcCUACGG------CAACGAGcCCGGCGAc -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 30227 | 0.7 | 0.203981 |
Target: 5'- uGGCGGggGUgaCGUccUGCgUGGGCUGCUGg -3' miRNA: 3'- -UCGCCuaCG--GCA--ACGaGCCCGGCGAC- -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 22908 | 0.7 | 0.203981 |
Target: 5'- cGGCGGAggcUGCCGggGCgaagcccucCGaGGCCGCg- -3' miRNA: 3'- -UCGCCU---ACGGCaaCGa--------GC-CCGGCGac -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 25447 | 0.69 | 0.226211 |
Target: 5'- gAGCGGcgGCCGguuucugggUGgUCGGccGCCGCUc -3' miRNA: 3'- -UCGCCuaCGGCa--------ACgAGCC--CGGCGAc -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 26134 | 0.69 | 0.23208 |
Target: 5'- cGCG---GCCGUggaaCUCGGGCUGCUGg -3' miRNA: 3'- uCGCcuaCGGCAac--GAGCCCGGCGAC- -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 9658 | 0.69 | 0.244204 |
Target: 5'- uGGCGGAgagacGCCGgUGCUCGGcgGCgGCa- -3' miRNA: 3'- -UCGCCUa----CGGCaACGAGCC--CGgCGac -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 8931 | 0.69 | 0.244204 |
Target: 5'- cGUGGAUGCCGaUGCaCGucauGGCCGCc- -3' miRNA: 3'- uCGCCUACGGCaACGaGC----CCGGCGac -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 1289 | 0.68 | 0.276814 |
Target: 5'- gAGgGGAUGCCGgaGUUCucccgcguGGCCGCg- -3' miRNA: 3'- -UCgCCUACGGCaaCGAGc-------CCGGCGac -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 5600 | 0.68 | 0.28796 |
Target: 5'- uGCGGAcgaUGCUGagugacgcgguggUGgaCGGGCUGCUGg -3' miRNA: 3'- uCGCCU---ACGGCa------------ACgaGCCCGGCGAC- -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 782 | 0.67 | 0.305336 |
Target: 5'- cGCGGGUGgaCC--UGCUCaGGCCGCg- -3' miRNA: 3'- uCGCCUAC--GGcaACGAGcCCGGCGac -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 23791 | 0.67 | 0.323504 |
Target: 5'- cGGUGGGggccgggGCCGUcuugacggaggaggcUGCUgcgCGGGCCcGCUGc -3' miRNA: 3'- -UCGCCUa------CGGCA---------------ACGA---GCCCGG-CGAC- -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 4039 | 0.67 | 0.343273 |
Target: 5'- aAGCGcg-GCCGUcugGCUccaucccCGGGCCGCg- -3' miRNA: 3'- -UCGCcuaCGGCAa--CGA-------GCCCGGCGac -5' |
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11572 | 3' | -61 | NC_003085.1 | + | 2622 | 0.67 | 0.344892 |
Target: 5'- aAGCGGAgcGCUGgcucccagcuacccGCUUGGGCCGUg- -3' miRNA: 3'- -UCGCCUa-CGGCaa------------CGAGCCCGGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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