Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11572 | 3' | -61 | NC_003085.1 | + | 10793 | 0.66 | 0.351421 |
Target: 5'- cAGCGuccgcuUGCCGUcagccagUGCcucgCGGGCCGCg- -3' miRNA: 3'- -UCGCcu----ACGGCA-------ACGa---GCCCGGCGac -5' |
|||||||
11572 | 3' | -61 | NC_003085.1 | + | 3224 | 0.66 | 0.352243 |
Target: 5'- aGGC-GAUGCCGgcGCUaccUGGGCCGg-- -3' miRNA: 3'- -UCGcCUACGGCaaCGA---GCCCGGCgac -5' |
|||||||
11572 | 3' | -61 | NC_003085.1 | + | 37111 | 0.66 | 0.368974 |
Target: 5'- cGCGGuacagGCCGgUGUcCGGGUCGCc- -3' miRNA: 3'- uCGCCua---CGGCaACGaGCCCGGCGac -5' |
|||||||
11572 | 3' | -61 | NC_003085.1 | + | 22862 | 0.66 | 0.377541 |
Target: 5'- gGGCGGGagcgGCCGUUGC-CGcuGCCGUc- -3' miRNA: 3'- -UCGCCUa---CGGCAACGaGCc-CGGCGac -5' |
|||||||
11572 | 3' | -61 | NC_003085.1 | + | 4221 | 0.66 | 0.377541 |
Target: 5'- cGGCGGGUuacGCUGagcgucaGC-CGGGCCGCa- -3' miRNA: 3'- -UCGCCUA---CGGCaa-----CGaGCCCGGCGac -5' |
|||||||
11572 | 3' | -61 | NC_003085.1 | + | 44233 | 0.66 | 0.395072 |
Target: 5'- -uUGGAgGCCGcuuccUGC-CGGGCCGCg- -3' miRNA: 3'- ucGCCUaCGGCa----ACGaGCCCGGCGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home