miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11572 5' -55 NC_003085.1 + 21414 0.65 0.727873
Target:  5'- uGGCGc--GCUCCAGcagggugaugcgcGUGCUGACGaggucgauuUCCu -3'
miRNA:   3'- -CCGUcaaCGAGGUC-------------CACGACUGC---------AGG- -5'
11572 5' -55 NC_003085.1 + 46389 0.66 0.718217
Target:  5'- gGGCAGUugaaguUGCUCUGGGa--UGACGUg- -3'
miRNA:   3'- -CCGUCA------ACGAGGUCCacgACUGCAgg -5'
11572 5' -55 NC_003085.1 + 28991 0.66 0.69652
Target:  5'- cGGCAGUUG----GGGcaUGCaGACGUCCu -3'
miRNA:   3'- -CCGUCAACgaggUCC--ACGaCUGCAGG- -5'
11572 5' -55 NC_003085.1 + 32438 0.66 0.693242
Target:  5'- cGCAGcUGCgcucUCCAGGcguuugaaagccccUGCgGugGUCCc -3'
miRNA:   3'- cCGUCaACG----AGGUCC--------------ACGaCugCAGG- -5'
11572 5' -55 NC_003085.1 + 23213 0.66 0.685571
Target:  5'- aGGCAGUgg--CCGGGcUGCUccaGACGgCCg -3'
miRNA:   3'- -CCGUCAacgaGGUCC-ACGA---CUGCaGG- -5'
11572 5' -55 NC_003085.1 + 45764 0.66 0.674569
Target:  5'- cGCAG-UGCUCCGugacucgcgGCUGACGgacgCCg -3'
miRNA:   3'- cCGUCaACGAGGUcca------CGACUGCa---GG- -5'
11572 5' -55 NC_003085.1 + 40352 0.66 0.674569
Target:  5'- gGGCGGUgggcaagccgcUGCUgcCCGcGGcGCUGACG-CCu -3'
miRNA:   3'- -CCGUCA-----------ACGA--GGU-CCaCGACUGCaGG- -5'
11572 5' -55 NC_003085.1 + 43556 0.67 0.663527
Target:  5'- aGGCGG-UGggCCguuugucgaguGGGUGCgUGACGUCa -3'
miRNA:   3'- -CCGUCaACgaGG-----------UCCACG-ACUGCAGg -5'
11572 5' -55 NC_003085.1 + 27677 0.67 0.663527
Target:  5'- cGGCGGcgacgUGCU---GGUGCUGucgcgucuggGCGUCCg -3'
miRNA:   3'- -CCGUCa----ACGAgguCCACGAC----------UGCAGG- -5'
11572 5' -55 NC_003085.1 + 46747 0.67 0.641364
Target:  5'- cGGCGGc-GCUCCAGGcgGC-GGCGaagcgCCu -3'
miRNA:   3'- -CCGUCaaCGAGGUCCa-CGaCUGCa----GG- -5'
11572 5' -55 NC_003085.1 + 771 0.67 0.641364
Target:  5'- cGCAGUUGCUUgcGGccugcUGCUGugGcCCc -3'
miRNA:   3'- cCGUCAACGAGguCC-----ACGACugCaGG- -5'
11572 5' -55 NC_003085.1 + 14261 0.68 0.608079
Target:  5'- uGCAGcgagacgUGCggCCAGGcUGCUGcCGUCa -3'
miRNA:   3'- cCGUCa------ACGa-GGUCC-ACGACuGCAGg -5'
11572 5' -55 NC_003085.1 + 4211 0.68 0.597014
Target:  5'- aGCAGUcGCUCCGuagagcGGcGCUGGaGUCCc -3'
miRNA:   3'- cCGUCAaCGAGGU------CCaCGACUgCAGG- -5'
11572 5' -55 NC_003085.1 + 24618 0.68 0.585979
Target:  5'- ------cGCUCCAGGUGCUGcaGCGcUUCa -3'
miRNA:   3'- ccgucaaCGAGGUCCACGAC--UGC-AGG- -5'
11572 5' -55 NC_003085.1 + 16362 0.68 0.585979
Target:  5'- uGGCGccUGCUCCAGuagucgcgccaGUaGCgGGCGUCCu -3'
miRNA:   3'- -CCGUcaACGAGGUC-----------CA-CGaCUGCAGG- -5'
11572 5' -55 NC_003085.1 + 40690 0.68 0.564035
Target:  5'- cGCAGggGgacgacgUCCGGGUGCUGgACGcgCCg -3'
miRNA:   3'- cCGUCaaCg------AGGUCCACGAC-UGCa-GG- -5'
11572 5' -55 NC_003085.1 + 18298 0.7 0.489375
Target:  5'- gGGCGGUgcacGC-CCcGGcGCUGGcCGUCCg -3'
miRNA:   3'- -CCGUCAa---CGaGGuCCaCGACU-GCAGG- -5'
11572 5' -55 NC_003085.1 + 11457 0.7 0.489375
Target:  5'- cGGCGGUagcGCUCCAcccacuUGCUGACGgugUCCu -3'
miRNA:   3'- -CCGUCAa--CGAGGUcc----ACGACUGC---AGG- -5'
11572 5' -55 NC_003085.1 + 42418 0.7 0.489375
Target:  5'- aGCGGgcgGCgaaggaagUCCAGGaUGCUGGCGaCCu -3'
miRNA:   3'- cCGUCaa-CG--------AGGUCC-ACGACUGCaGG- -5'
11572 5' -55 NC_003085.1 + 41836 0.7 0.458791
Target:  5'- cGGCugg-GCuUCCAGGcugGCcgGGCGUCCg -3'
miRNA:   3'- -CCGucaaCG-AGGUCCa--CGa-CUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.