miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11572 5' -55 NC_003085.1 + 12175 0.71 0.429255
Target:  5'- uGGCcGUgGUUCCAGGUGggcGACGUCg -3'
miRNA:   3'- -CCGuCAaCGAGGUCCACga-CUGCAGg -5'
11572 5' -55 NC_003085.1 + 6632 0.71 0.429255
Target:  5'- cGGCGccggacGUgaGCgcaAGGUGCUGGCGUCCc -3'
miRNA:   3'- -CCGU------CAa-CGaggUCCACGACUGCAGG- -5'
11572 5' -55 NC_003085.1 + 44775 0.71 0.40087
Target:  5'- cGGUuggAGUgacgacuuucgGCUCuCGGGUGCUGGCaUCCg -3'
miRNA:   3'- -CCG---UCAa----------CGAG-GUCCACGACUGcAGG- -5'
11572 5' -55 NC_003085.1 + 12801 0.72 0.382623
Target:  5'- gGGCAGgUGCUCCAcGccCUGACgGUCCg -3'
miRNA:   3'- -CCGUCaACGAGGUcCacGACUG-CAGG- -5'
11572 5' -55 NC_003085.1 + 37099 0.72 0.381725
Target:  5'- cGCAGUcGCUCCAGuucacgaGUGCUGGCaccGUCa -3'
miRNA:   3'- cCGUCAaCGAGGUC-------CACGACUG---CAGg -5'
11572 5' -55 NC_003085.1 + 6762 0.73 0.307592
Target:  5'- gGGCGGccgcaagccGCUCCAGGgccaucagGgaGGCGUCCa -3'
miRNA:   3'- -CCGUCaa-------CGAGGUCCa-------CgaCUGCAGG- -5'
11572 5' -55 NC_003085.1 + 26411 1.15 0.000378
Target:  5'- uGGCAGUUGCUCCAGGUGCUGACGUCCg -3'
miRNA:   3'- -CCGUCAACGAGGUCCACGACUGCAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.