Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11572 | 5' | -55 | NC_003085.1 | + | 45764 | 0.66 | 0.674569 |
|
Target: 5'- cGCAG-UGCUCCGugacucgcgGCUGACGgacgCCg -3' miRNA: 3'- cCGUCaACGAGGUcca------CGACUGCa---GG- -5' |
|||||||
| 11572 | 5' | -55 | NC_003085.1 | + | 40352 | 0.66 | 0.674569 |
|
Target: 5'- gGGCGGUgggcaagccgcUGCUgcCCGcGGcGCUGACG-CCu -3' miRNA: 3'- -CCGUCA-----------ACGA--GGU-CCaCGACUGCaGG- -5' |
|||||||
| 11572 | 5' | -55 | NC_003085.1 | + | 23213 | 0.66 | 0.685571 |
|
Target: 5'- aGGCAGUgg--CCGGGcUGCUccaGACGgCCg -3' miRNA: 3'- -CCGUCAacgaGGUCC-ACGA---CUGCaGG- -5' |
|||||||
| 11572 | 5' | -55 | NC_003085.1 | + | 32438 | 0.66 | 0.693242 |
|
Target: 5'- cGCAGcUGCgcucUCCAGGcguuugaaagccccUGCgGugGUCCc -3' miRNA: 3'- cCGUCaACG----AGGUCC--------------ACGaCugCAGG- -5' |
|||||||
| 11572 | 5' | -55 | NC_003085.1 | + | 28991 | 0.66 | 0.69652 |
|
Target: 5'- cGGCAGUUG----GGGcaUGCaGACGUCCu -3' miRNA: 3'- -CCGUCAACgaggUCC--ACGaCUGCAGG- -5' |
|||||||
| 11572 | 5' | -55 | NC_003085.1 | + | 46389 | 0.66 | 0.718217 |
|
Target: 5'- gGGCAGUugaaguUGCUCUGGGa--UGACGUg- -3' miRNA: 3'- -CCGUCA------ACGAGGUCCacgACUGCAgg -5' |
|||||||
| 11572 | 5' | -55 | NC_003085.1 | + | 21414 | 0.65 | 0.727873 |
|
Target: 5'- uGGCGc--GCUCCAGcagggugaugcgcGUGCUGACGaggucgauuUCCu -3' miRNA: 3'- -CCGUcaaCGAGGUC-------------CACGACUGC---------AGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home