Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11573 | 5' | -52.8 | NC_003085.1 | + | 26640 | 1.11 | 0.001063 |
Target: 5'- uCAAACUGAGGUGGCAACGCGCCAAGGg -3' miRNA: 3'- -GUUUGACUCCACCGUUGCGCGGUUCC- -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 17420 | 0.78 | 0.211795 |
Target: 5'- --cACUGAGGUGGCu---CGCCAGGGu -3' miRNA: 3'- guuUGACUCCACCGuugcGCGGUUCC- -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 47386 | 0.76 | 0.262405 |
Target: 5'- --cGCUGGagauGGUGGaCAACGuCGCCAAGGc -3' miRNA: 3'- guuUGACU----CCACC-GUUGC-GCGGUUCC- -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 12743 | 0.74 | 0.364857 |
Target: 5'- gGGGCcgGAGGUGGU-GCGUGUCGAGGu -3' miRNA: 3'- gUUUGa-CUCCACCGuUGCGCGGUUCC- -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 16333 | 0.73 | 0.430443 |
Target: 5'- gCGGGCguccugGAGGcGGCGGCGCaGCaCGAGGa -3' miRNA: 3'- -GUUUGa-----CUCCaCCGUUGCG-CG-GUUCC- -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 7336 | 0.72 | 0.460592 |
Target: 5'- -cGGCUGAGGacgcgGGCuacACGCGCCccuGGGc -3' miRNA: 3'- guUUGACUCCa----CCGu--UGCGCGGu--UCC- -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 48527 | 0.71 | 0.488655 |
Target: 5'- aAGGCUGAGGUGGCcuaugcuCGCgGCCucgccguccaugcgGAGGa -3' miRNA: 3'- gUUUGACUCCACCGuu-----GCG-CGG--------------UUCC- -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 40508 | 0.71 | 0.534901 |
Target: 5'- aGGGCUGGacGGcggcaGGCAGCGCGCCuccgAAGGu -3' miRNA: 3'- gUUUGACU--CCa----CCGUUGCGCGG----UUCC- -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 3381 | 0.71 | 0.545886 |
Target: 5'- gAGAcCUGGGcuGUGGCGACugaGCGCCgAAGGg -3' miRNA: 3'- gUUU-GACUC--CACCGUUG---CGCGG-UUCC- -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 30696 | 0.69 | 0.612996 |
Target: 5'- --uGCUGAGGaGGCGAaGCGgCgCAAGGg -3' miRNA: 3'- guuUGACUCCaCCGUUgCGC-G-GUUCC- -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 27547 | 0.69 | 0.635608 |
Target: 5'- aCAGGCcgacGAGGUGGCcucccgcacgaaacuGCGCGCCcauuucgAAGGg -3' miRNA: 3'- -GUUUGa---CUCCACCGu--------------UGCGCGG-------UUCC- -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 13811 | 0.69 | 0.645784 |
Target: 5'- --uGCgugGAGGUGGCGccaugacgugcagACGCcGCCcAGGg -3' miRNA: 3'- guuUGa--CUCCACCGU-------------UGCG-CGGuUCC- -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 21254 | 0.69 | 0.646914 |
Target: 5'- gCGAACUGgacgacggacaAGGUGGUGcCGCGCCcAGa -3' miRNA: 3'- -GUUUGAC-----------UCCACCGUuGCGCGGuUCc -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 32835 | 0.68 | 0.669472 |
Target: 5'- -uGAUUGGGGcccgagaGGCcGCGCGCCGcGGg -3' miRNA: 3'- guUUGACUCCa------CCGuUGCGCGGUuCC- -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 4994 | 0.68 | 0.680701 |
Target: 5'- uCAGACUGAGGcGGCAGCccucgcaaGUGUCAGc- -3' miRNA: 3'- -GUUUGACUCCaCCGUUG--------CGCGGUUcc -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 20384 | 0.68 | 0.703002 |
Target: 5'- cCAGGgUGaAGGUGGCGgGCGCGUUggGc -3' miRNA: 3'- -GUUUgAC-UCCACCGU-UGCGCGGuuCc -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 42715 | 0.68 | 0.709639 |
Target: 5'- -uGGCUaugGAGGUGGCGcgacgacgaggggaACGCcgcgaaugucuccGCCGAGGg -3' miRNA: 3'- guUUGA---CUCCACCGU--------------UGCG-------------CGGUUCC- -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 15224 | 0.68 | 0.714048 |
Target: 5'- uGGGC-GAGGUGGacuUGCGCCAacucuGGGa -3' miRNA: 3'- gUUUGaCUCCACCguuGCGCGGU-----UCC- -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 11596 | 0.67 | 0.72501 |
Target: 5'- gGAAC-GGGGcagGGCGGCGCGaaGGGGc -3' miRNA: 3'- gUUUGaCUCCa--CCGUUGCGCggUUCC- -5' |
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11573 | 5' | -52.8 | NC_003085.1 | + | 35203 | 0.67 | 0.72501 |
Target: 5'- --uACUGGGacGGCAAUGCGCCcGGa -3' miRNA: 3'- guuUGACUCcaCCGUUGCGCGGuUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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