miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11573 5' -52.8 NC_003085.1 + 2432 0.67 0.746627
Target:  5'- ---cCUGGGGUGGUAGauggaGCGCCu--- -3'
miRNA:   3'- guuuGACUCCACCGUUg----CGCGGuucc -5'
11573 5' -52.8 NC_003085.1 + 2965 0.67 0.777075
Target:  5'- uCAAGCgcgcGGUGGUuucgucgAGCGCGCguGGGa -3'
miRNA:   3'- -GUUUGacu-CCACCG-------UUGCGCGguUCC- -5'
11573 5' -52.8 NC_003085.1 + 3381 0.71 0.545886
Target:  5'- gAGAcCUGGGcuGUGGCGACugaGCGCCgAAGGg -3'
miRNA:   3'- gUUU-GACUC--CACCGUUG---CGCGG-UUCC- -5'
11573 5' -52.8 NC_003085.1 + 4994 0.68 0.680701
Target:  5'- uCAGACUGAGGcGGCAGCccucgcaaGUGUCAGc- -3'
miRNA:   3'- -GUUUGACUCCaCCGUUG--------CGCGGUUcc -5'
11573 5' -52.8 NC_003085.1 + 7336 0.72 0.460592
Target:  5'- -cGGCUGAGGacgcgGGCuacACGCGCCccuGGGc -3'
miRNA:   3'- guUUGACUCCa----CCGu--UGCGCGGu--UCC- -5'
11573 5' -52.8 NC_003085.1 + 8815 0.67 0.72501
Target:  5'- gGGACUGAGGcugccgagacaUGGCuGCGCGagCAGGa -3'
miRNA:   3'- gUUUGACUCC-----------ACCGuUGCGCg-GUUCc -5'
11573 5' -52.8 NC_003085.1 + 11327 0.66 0.827215
Target:  5'- aGGACUggaagucccgcGAGGUGGCGgaagaacucgGCGUcaGCCAGGa -3'
miRNA:   3'- gUUUGA-----------CUCCACCGU----------UGCG--CGGUUCc -5'
11573 5' -52.8 NC_003085.1 + 11596 0.67 0.72501
Target:  5'- gGAAC-GGGGcagGGCGGCGCGaaGGGGc -3'
miRNA:   3'- gUUUGaCUCCa--CCGUUGCGCggUUCC- -5'
11573 5' -52.8 NC_003085.1 + 12743 0.74 0.364857
Target:  5'- gGGGCcgGAGGUGGU-GCGUGUCGAGGu -3'
miRNA:   3'- gUUUGa-CUCCACCGuUGCGCGGUUCC- -5'
11573 5' -52.8 NC_003085.1 + 13811 0.69 0.645784
Target:  5'- --uGCgugGAGGUGGCGccaugacgugcagACGCcGCCcAGGg -3'
miRNA:   3'- guuUGa--CUCCACCGU-------------UGCG-CGGuUCC- -5'
11573 5' -52.8 NC_003085.1 + 15224 0.68 0.714048
Target:  5'- uGGGC-GAGGUGGacuUGCGCCAacucuGGGa -3'
miRNA:   3'- gUUUGaCUCCACCguuGCGCGGU-----UCC- -5'
11573 5' -52.8 NC_003085.1 + 15973 0.66 0.788292
Target:  5'- --cGCUGGGaGguggGGCGugaGCGUCAGGGu -3'
miRNA:   3'- guuUGACUC-Ca---CCGUug-CGCGGUUCC- -5'
11573 5' -52.8 NC_003085.1 + 16333 0.73 0.430443
Target:  5'- gCGGGCguccugGAGGcGGCGGCGCaGCaCGAGGa -3'
miRNA:   3'- -GUUUGa-----CUCCaCCGUUGCG-CG-GUUCC- -5'
11573 5' -52.8 NC_003085.1 + 17420 0.78 0.211795
Target:  5'- --cACUGAGGUGGCu---CGCCAGGGu -3'
miRNA:   3'- guuUGACUCCACCGuugcGCGGUUCC- -5'
11573 5' -52.8 NC_003085.1 + 17957 0.66 0.794324
Target:  5'- --uGCUGGGGcaccugaagcgccGGCAGCGCggGCCGcAGGg -3'
miRNA:   3'- guuUGACUCCa------------CCGUUGCG--CGGU-UCC- -5'
11573 5' -52.8 NC_003085.1 + 18550 0.66 0.797316
Target:  5'- gAAGCacGAGGUGGCGggcaaggACG-GCCAAGc -3'
miRNA:   3'- gUUUGa-CUCCACCGU-------UGCgCGGUUCc -5'
11573 5' -52.8 NC_003085.1 + 20317 0.67 0.754083
Target:  5'- -cGACUGcgccaccugggcgaAGGUGGCGACGUaCCGgaAGGc -3'
miRNA:   3'- guUUGAC--------------UCCACCGUUGCGcGGU--UCC- -5'
11573 5' -52.8 NC_003085.1 + 20384 0.68 0.703002
Target:  5'- cCAGGgUGaAGGUGGCGgGCGCGUUggGc -3'
miRNA:   3'- -GUUUgAC-UCCACCGU-UGCGCGGuuCc -5'
11573 5' -52.8 NC_003085.1 + 21254 0.69 0.646914
Target:  5'- gCGAACUGgacgacggacaAGGUGGUGcCGCGCCcAGa -3'
miRNA:   3'- -GUUUGAC-----------UCCACCGUuGCGCGGuUCc -5'
11573 5' -52.8 NC_003085.1 + 24636 0.66 0.788292
Target:  5'- cCAGACaugaUGAGGUcaGGCAugucCGCGCCGc-- -3'
miRNA:   3'- -GUUUG----ACUCCA--CCGUu---GCGCGGUucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.