miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11577 3' -58.4 NC_003085.1 + 1561 0.68 0.410893
Target:  5'- gCCGU-GCG-CGUCGCCUgcaguuGCGGCgcgGCg -3'
miRNA:   3'- aGGCGcCGCaGCAGCGGA------UGCUGa--CG- -5'
11577 3' -58.4 NC_003085.1 + 1673 0.68 0.448245
Target:  5'- -aCGCGGCGaCGUCacccUCUACcACUGCa -3'
miRNA:   3'- agGCGCCGCaGCAGc---GGAUGcUGACG- -5'
11577 3' -58.4 NC_003085.1 + 2171 0.66 0.569995
Target:  5'- gCCGaUGGCGcCGagGUgcgGCGGCUGCg -3'
miRNA:   3'- aGGC-GCCGCaGCagCGga-UGCUGACG- -5'
11577 3' -58.4 NC_003085.1 + 3942 0.66 0.569995
Target:  5'- gCCGCGGCGaUGUUGUC-GCGGCc-- -3'
miRNA:   3'- aGGCGCCGCaGCAGCGGaUGCUGacg -5'
11577 3' -58.4 NC_003085.1 + 4104 0.66 0.559432
Target:  5'- -gCGCGGUGgCGUCGUC-ACGGCa-- -3'
miRNA:   3'- agGCGCCGCaGCAGCGGaUGCUGacg -5'
11577 3' -58.4 NC_003085.1 + 4273 0.68 0.448246
Target:  5'- gCCGC-GCGUCagcggCGuCCUGCGuCUGCu -3'
miRNA:   3'- aGGCGcCGCAGca---GC-GGAUGCuGACG- -5'
11577 3' -58.4 NC_003085.1 + 4433 0.67 0.507579
Target:  5'- cCCGaCGGUGcuccucacCGUCGCCgucgGCGcACUGUu -3'
miRNA:   3'- aGGC-GCCGCa-------GCAGCGGa---UGC-UGACG- -5'
11577 3' -58.4 NC_003085.1 + 5404 0.68 0.448246
Target:  5'- cUCCGCGGCcacgcgcuucUCgGUCGCCUucaggACGGC-GCg -3'
miRNA:   3'- -AGGCGCCGc---------AG-CAGCGGA-----UGCUGaCG- -5'
11577 3' -58.4 NC_003085.1 + 6325 0.66 0.535358
Target:  5'- aCgGCGGCGUCGUguaggcgucgaccaUGUCggaGCGcCUGCc -3'
miRNA:   3'- aGgCGCCGCAGCA--------------GCGGa--UGCuGACG- -5'
11577 3' -58.4 NC_003085.1 + 7462 0.66 0.5178
Target:  5'- cCCGgugGGCGUCG-CGCCUcACG-CUGg -3'
miRNA:   3'- aGGCg--CCGCAGCaGCGGA-UGCuGACg -5'
11577 3' -58.4 NC_003085.1 + 7900 0.67 0.497445
Target:  5'- aUUGUGGCGUCGgggcgagcgCGuCCUGuCGGCgUGCa -3'
miRNA:   3'- aGGCGCCGCAGCa--------GC-GGAU-GCUG-ACG- -5'
11577 3' -58.4 NC_003085.1 + 10095 0.71 0.282345
Target:  5'- cCCGcCGGCGUCGgaacCGCCguugAUGGacCUGCu -3'
miRNA:   3'- aGGC-GCCGCAGCa---GCGGa---UGCU--GACG- -5'
11577 3' -58.4 NC_003085.1 + 10456 0.72 0.243071
Target:  5'- cUCCGCGGCGcuUUGgCGCCccuCGGCUGg -3'
miRNA:   3'- -AGGCGCCGC--AGCaGCGGau-GCUGACg -5'
11577 3' -58.4 NC_003085.1 + 11476 0.73 0.219491
Target:  5'- aCCGCGGCGgugCGUCaGCCgGCGGuaGCg -3'
miRNA:   3'- aGGCGCCGCa--GCAG-CGGaUGCUgaCG- -5'
11577 3' -58.4 NC_003085.1 + 12975 0.67 0.477458
Target:  5'- gCCGUGGCGggGUCGCC----AUUGCa -3'
miRNA:   3'- aGGCGCCGCagCAGCGGaugcUGACG- -5'
11577 3' -58.4 NC_003085.1 + 15271 0.69 0.367022
Target:  5'- uUCCGCGGCG-CGgCGCUgGCGcACcgGCu -3'
miRNA:   3'- -AGGCGCCGCaGCaGCGGaUGC-UGa-CG- -5'
11577 3' -58.4 NC_003085.1 + 16231 0.67 0.487403
Target:  5'- aUCGCGGCuggCGUCGUCauccuCGuGCUGCg -3'
miRNA:   3'- aGGCGCCGca-GCAGCGGau---GC-UGACG- -5'
11577 3' -58.4 NC_003085.1 + 19056 0.66 0.528101
Target:  5'- uUCCGCGGCGcgCGgcggagcaggCGCCgggcccggACGGagUGCg -3'
miRNA:   3'- -AGGCGCCGCa-GCa---------GCGGa-------UGCUg-ACG- -5'
11577 3' -58.4 NC_003085.1 + 19609 0.67 0.477458
Target:  5'- cUCCGCgucgGGCGcCGUcCGCUg--GGCUGCu -3'
miRNA:   3'- -AGGCG----CCGCaGCA-GCGGaugCUGACG- -5'
11577 3' -58.4 NC_003085.1 + 20659 0.69 0.367022
Target:  5'- cUCGCGucGCGUCGgagUUGCUggaGCGGCUGCu -3'
miRNA:   3'- aGGCGC--CGCAGC---AGCGGa--UGCUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.