miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11577 3' -58.4 NC_003085.1 + 29580 0.67 0.497445
Target:  5'- uUCgGCGGCcUCaugaauGUCGCCUcuACG-CUGCc -3'
miRNA:   3'- -AGgCGCCGcAG------CAGCGGA--UGCuGACG- -5'
11577 3' -58.4 NC_003085.1 + 42626 0.69 0.381572
Target:  5'- aUUCGCGGCGuuccccUCGUCGUC-GCGccaccuccauagccACUGCa -3'
miRNA:   3'- -AGGCGCCGC------AGCAGCGGaUGC--------------UGACG- -5'
11577 3' -58.4 NC_003085.1 + 40375 0.69 0.384179
Target:  5'- cCCGCGGCGcUGaCGCCUcUGGCgcugGCc -3'
miRNA:   3'- aGGCGCCGCaGCaGCGGAuGCUGa---CG- -5'
11577 3' -58.4 NC_003085.1 + 27551 0.69 0.401861
Target:  5'- cUCCgGCGGCGgugaCGUCGCCaucUGGCaggGCa -3'
miRNA:   3'- -AGG-CGCCGCa---GCAGCGGau-GCUGa--CG- -5'
11577 3' -58.4 NC_003085.1 + 1561 0.68 0.410893
Target:  5'- gCCGU-GCG-CGUCGCCUgcaguuGCGGCgcgGCg -3'
miRNA:   3'- aGGCGcCGCaGCAGCGGA------UGCUGa--CG- -5'
11577 3' -58.4 NC_003085.1 + 1673 0.68 0.448245
Target:  5'- -aCGCGGCGaCGUCacccUCUACcACUGCa -3'
miRNA:   3'- agGCGCCGCaGCAGc---GGAUGcUGACG- -5'
11577 3' -58.4 NC_003085.1 + 40629 0.67 0.457874
Target:  5'- gCCGCuGCcguccUCGUCGCCcugACGcugGCUGCg -3'
miRNA:   3'- aGGCGcCGc----AGCAGCGGa--UGC---UGACG- -5'
11577 3' -58.4 NC_003085.1 + 40488 0.67 0.463705
Target:  5'- gCUGCuggcgGGCGUCGUCgaGCCggagccgcugaagGCGACUGg -3'
miRNA:   3'- aGGCG-----CCGCAGCAG--CGGa------------UGCUGACg -5'
11577 3' -58.4 NC_003085.1 + 16231 0.67 0.487403
Target:  5'- aUCGCGGCuggCGUCGUCauccuCGuGCUGCg -3'
miRNA:   3'- aGGCGCCGca-GCAGCGGau---GC-UGACG- -5'
11577 3' -58.4 NC_003085.1 + 20659 0.69 0.367022
Target:  5'- cUCGCGucGCGUCGgagUUGCUggaGCGGCUGCu -3'
miRNA:   3'- aGGCGC--CGCAGC---AGCGGa--UGCUGACG- -5'
11577 3' -58.4 NC_003085.1 + 31623 0.7 0.34229
Target:  5'- gCCGCGGggccugaaGUCGU-GCCUGagcccagccCGACUGCu -3'
miRNA:   3'- aGGCGCCg-------CAGCAgCGGAU---------GCUGACG- -5'
11577 3' -58.4 NC_003085.1 + 30650 0.7 0.326482
Target:  5'- aCCGUGGCGa-GUCGC-UGCGGCaggGCg -3'
miRNA:   3'- aGGCGCCGCagCAGCGgAUGCUGa--CG- -5'
11577 3' -58.4 NC_003085.1 + 29728 0.77 0.112627
Target:  5'- aCCuCGGCGUCGUCGCCcAgGACgugGCc -3'
miRNA:   3'- aGGcGCCGCAGCAGCGGaUgCUGa--CG- -5'
11577 3' -58.4 NC_003085.1 + 25255 0.75 0.151859
Target:  5'- cUCCGCGGCGggCGUCGUCguCGGC-GCg -3'
miRNA:   3'- -AGGCGCCGCa-GCAGCGGauGCUGaCG- -5'
11577 3' -58.4 NC_003085.1 + 44442 0.75 0.168977
Target:  5'- cUCG-GGCGUCGUCGUCUucuCGGcCUGCg -3'
miRNA:   3'- aGGCgCCGCAGCAGCGGAu--GCU-GACG- -5'
11577 3' -58.4 NC_003085.1 + 39293 0.73 0.197892
Target:  5'- gCUGCGGUGUC-UCGCCaacUACGAC-GCa -3'
miRNA:   3'- aGGCGCCGCAGcAGCGG---AUGCUGaCG- -5'
11577 3' -58.4 NC_003085.1 + 41003 0.72 0.231028
Target:  5'- cCCaGCGGCGUCGucaUCGCCguggGCGucGCUGg -3'
miRNA:   3'- aGG-CGCCGCAGC---AGCGGa---UGC--UGACg -5'
11577 3' -58.4 NC_003085.1 + 10456 0.72 0.243071
Target:  5'- cUCCGCGGCGcuUUGgCGCCccuCGGCUGg -3'
miRNA:   3'- -AGGCGCCGC--AGCaGCGGau-GCUGACg -5'
11577 3' -58.4 NC_003085.1 + 38840 0.72 0.249287
Target:  5'- aCUGCcGCGUCGUCcCaCUGCGACgGCg -3'
miRNA:   3'- aGGCGcCGCAGCAGcG-GAUGCUGaCG- -5'
11577 3' -58.4 NC_003085.1 + 10095 0.71 0.282345
Target:  5'- cCCGcCGGCGUCGgaacCGCCguugAUGGacCUGCu -3'
miRNA:   3'- aGGC-GCCGCAGCa---GCGGa---UGCU--GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.