miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11579 3' -54.6 NC_003085.1 + 29270 1.09 0.000952
Target:  5'- gUCCGAAUUCGGCCAGCAGCGCAACGAc -3'
miRNA:   3'- -AGGCUUAAGCCGGUCGUCGCGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 35071 0.79 0.133579
Target:  5'- cUCCaGAGccUCGGCCAGCAGCGUGcgcACGAg -3'
miRNA:   3'- -AGG-CUUa-AGCCGGUCGUCGCGU---UGCU- -5'
11579 3' -54.6 NC_003085.1 + 3694 0.78 0.153729
Target:  5'- gUUgGGAUgCGGCCAcGCAGCGCGACGu -3'
miRNA:   3'- -AGgCUUAaGCCGGU-CGUCGCGUUGCu -5'
11579 3' -54.6 NC_003085.1 + 37935 0.77 0.181518
Target:  5'- cUCCGAcgUCuGGCCGGcCAGCGCAggcaGCGc -3'
miRNA:   3'- -AGGCUuaAG-CCGGUC-GUCGCGU----UGCu -5'
11579 3' -54.6 NC_003085.1 + 46824 0.75 0.257218
Target:  5'- cUCCGGcgaggacuucGggCGGCUGGCAGCGCGcGCGAa -3'
miRNA:   3'- -AGGCU----------UaaGCCGGUCGUCGCGU-UGCU- -5'
11579 3' -54.6 NC_003085.1 + 29093 0.74 0.278006
Target:  5'- cUCCGggUUgccCGGCguCAGCAGCgGCGACGc -3'
miRNA:   3'- -AGGCuuAA---GCCG--GUCGUCG-CGUUGCu -5'
11579 3' -54.6 NC_003085.1 + 26908 0.73 0.323549
Target:  5'- aCCGuc-UCGGCgGGCAGCGCcaugccugucAGCGAc -3'
miRNA:   3'- aGGCuuaAGCCGgUCGUCGCG----------UUGCU- -5'
11579 3' -54.6 NC_003085.1 + 12632 0.72 0.35688
Target:  5'- aCCGucccagccCGGCCAGCGGCGCGGg-- -3'
miRNA:   3'- aGGCuuaa----GCCGGUCGUCGCGUUgcu -5'
11579 3' -54.6 NC_003085.1 + 28785 0.72 0.374427
Target:  5'- gCCGAAgcgcagGGCCAGC-GCGCAGCu- -3'
miRNA:   3'- aGGCUUaag---CCGGUCGuCGCGUUGcu -5'
11579 3' -54.6 NC_003085.1 + 48383 0.72 0.374427
Target:  5'- cCUGAGcgCGGCgAGCAGCGCcGCa- -3'
miRNA:   3'- aGGCUUaaGCCGgUCGUCGCGuUGcu -5'
11579 3' -54.6 NC_003085.1 + 34775 0.71 0.401821
Target:  5'- cUUCGggUUCGGCaggcGCAGUaCGACGAg -3'
miRNA:   3'- -AGGCuuAAGCCGgu--CGUCGcGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 27590 0.71 0.401821
Target:  5'- cCCGGccaGUUCGGCCAccuucggccugcGCGGUGUGugGAg -3'
miRNA:   3'- aGGCU---UAAGCCGGU------------CGUCGCGUugCU- -5'
11579 3' -54.6 NC_003085.1 + 26969 0.71 0.401821
Target:  5'- gUCCGAGcUCGGCCugcGCAGC-CGGCu- -3'
miRNA:   3'- -AGGCUUaAGCCGGu--CGUCGcGUUGcu -5'
11579 3' -54.6 NC_003085.1 + 42541 0.71 0.411232
Target:  5'- cCCGcuucgccUCGGCCAGC-GCGCgGGCGAg -3'
miRNA:   3'- aGGCuua----AGCCGGUCGuCGCG-UUGCU- -5'
11579 3' -54.6 NC_003085.1 + 22933 0.71 0.420777
Target:  5'- cUCCGAGgcCGcGUCGaCGGCGCGGCGAa -3'
miRNA:   3'- -AGGCUUaaGC-CGGUcGUCGCGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 28696 0.71 0.420777
Target:  5'- aUCGAAa--GGCCGGCcGCaGCAGCGAg -3'
miRNA:   3'- aGGCUUaagCCGGUCGuCG-CGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 32138 0.7 0.460253
Target:  5'- -aCGGGggCGGCUGGUGGCGCggUGGg -3'
miRNA:   3'- agGCUUaaGCCGGUCGUCGCGuuGCU- -5'
11579 3' -54.6 NC_003085.1 + 7052 0.7 0.470427
Target:  5'- gUCCGAAg-CGGCCGG-AGC-CAACGGa -3'
miRNA:   3'- -AGGCUUaaGCCGGUCgUCGcGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 29992 0.7 0.480713
Target:  5'- aCCGGAUggggagCGGCCcugGGCGGCcuugGCGACGu -3'
miRNA:   3'- aGGCUUAa-----GCCGG---UCGUCG----CGUUGCu -5'
11579 3' -54.6 NC_003085.1 + 48723 0.7 0.491108
Target:  5'- aCCGGAaggacccagUCGGCCuGUGGCGCAAggUGAa -3'
miRNA:   3'- aGGCUUa--------AGCCGGuCGUCGCGUU--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.