miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11579 3' -54.6 NC_003085.1 + 1124 0.66 0.710774
Target:  5'- cCCGAuguccaUCGGCCgagAGCGuGgGCGAUGAg -3'
miRNA:   3'- aGGCUua----AGCCGG---UCGU-CgCGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 2396 0.67 0.677755
Target:  5'- aCCGAugaagcggCGGCCGGUGGCGaGGCa- -3'
miRNA:   3'- aGGCUuaa-----GCCGGUCGUCGCgUUGcu -5'
11579 3' -54.6 NC_003085.1 + 3694 0.78 0.153729
Target:  5'- gUUgGGAUgCGGCCAcGCAGCGCGACGu -3'
miRNA:   3'- -AGgCUUAaGCCGGU-CGUCGCGUUGCu -5'
11579 3' -54.6 NC_003085.1 + 5514 0.69 0.521816
Target:  5'- aUCCGGGagCGGUCAuccaugaccgagcGCAGCGUGACGc -3'
miRNA:   3'- -AGGCUUaaGCCGGU-------------CGUCGCGUUGCu -5'
11579 3' -54.6 NC_003085.1 + 6746 0.66 0.699832
Target:  5'- gUCCGAcugccCGGCCuGCcGCGCcguGGCGGa -3'
miRNA:   3'- -AGGCUuaa--GCCGGuCGuCGCG---UUGCU- -5'
11579 3' -54.6 NC_003085.1 + 7052 0.7 0.470427
Target:  5'- gUCCGAAg-CGGCCGG-AGC-CAACGGa -3'
miRNA:   3'- -AGGCUUaaGCCGGUCgUCGcGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 8065 0.68 0.566412
Target:  5'- aCCGAGUcaggcaUGGCCGGUacaugagcggAGCGCAACa- -3'
miRNA:   3'- aGGCUUAa-----GCCGGUCG----------UCGCGUUGcu -5'
11579 3' -54.6 NC_003085.1 + 9967 0.67 0.621977
Target:  5'- cCCGGAagaagCGGCCAGCuucCGCuGACGGc -3'
miRNA:   3'- aGGCUUaa---GCCGGUCGuc-GCG-UUGCU- -5'
11579 3' -54.6 NC_003085.1 + 10551 0.68 0.576343
Target:  5'- gCCGcgcagcaggUCGGCCAGCcgaggggcgccaaAGCGCcGCGGa -3'
miRNA:   3'- aGGCuua------AGCCGGUCG-------------UCGCGuUGCU- -5'
11579 3' -54.6 NC_003085.1 + 11981 0.69 0.522888
Target:  5'- -gCGGAUugguccucUUGGCCuGCGGCaGCAGCGGc -3'
miRNA:   3'- agGCUUA--------AGCCGGuCGUCG-CGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 12632 0.72 0.35688
Target:  5'- aCCGucccagccCGGCCAGCGGCGCGGg-- -3'
miRNA:   3'- aGGCuuaa----GCCGGUCGUCGCGUUgcu -5'
11579 3' -54.6 NC_003085.1 + 13552 0.66 0.699832
Target:  5'- cUCCGAGguccaGGUCgAGCcGCGCcGCGAu -3'
miRNA:   3'- -AGGCUUaag--CCGG-UCGuCGCGuUGCU- -5'
11579 3' -54.6 NC_003085.1 + 15362 0.66 0.699832
Target:  5'- cCCG-----GGCCAGCaugacgcgGGCGCGGCGGg -3'
miRNA:   3'- aGGCuuaagCCGGUCG--------UCGCGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 17967 0.66 0.710774
Target:  5'- cCUGAAgc--GCCGGCAGCGCGggccgcagggcACGGa -3'
miRNA:   3'- aGGCUUaagcCGGUCGUCGCGU-----------UGCU- -5'
11579 3' -54.6 NC_003085.1 + 21473 0.69 0.544509
Target:  5'- gCCGAcaagggCGGCCugcGCGGCGUggUGGa -3'
miRNA:   3'- aGGCUuaa---GCCGGu--CGUCGCGuuGCU- -5'
11579 3' -54.6 NC_003085.1 + 22775 0.66 0.710774
Target:  5'- gCCGcgg-UGGCgaCGGCAGCGgCAACGGc -3'
miRNA:   3'- aGGCuuaaGCCG--GUCGUCGC-GUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 22933 0.71 0.420777
Target:  5'- cUCCGAGgcCGcGUCGaCGGCGCGGCGAa -3'
miRNA:   3'- -AGGCUUaaGC-CGGUcGUCGCGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 23416 0.68 0.566412
Target:  5'- cUCGg---CGGCCGGCGGCGCuuggccggccagAGCGGc -3'
miRNA:   3'- aGGCuuaaGCCGGUCGUCGCG------------UUGCU- -5'
11579 3' -54.6 NC_003085.1 + 26221 0.67 0.644334
Target:  5'- cCUGAAgucccUCGGCCAggauauGguGCGCGACu- -3'
miRNA:   3'- aGGCUUa----AGCCGGU------CguCGCGUUGcu -5'
11579 3' -54.6 NC_003085.1 + 26810 0.68 0.599656
Target:  5'- aCgGGAUUCGGCCAGUgaugccccuGCGCGccagGCGu -3'
miRNA:   3'- aGgCUUAAGCCGGUCGu--------CGCGU----UGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.