miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11582 3' -60.1 NC_003085.1 + 10465 0.66 0.452489
Target:  5'- uAGCGUGUccacgucuccuuCGCGGUAGUCA--GCGGGg -3'
miRNA:   3'- cUCGCGCG------------GCGUCGUUAGUggCGCCC- -5'
11582 3' -60.1 NC_003085.1 + 7508 0.66 0.452489
Target:  5'- cGAGCG-GuuGCAGgAcAUCACCGaCGaGGa -3'
miRNA:   3'- -CUCGCgCggCGUCgU-UAGUGGC-GC-CC- -5'
11582 3' -60.1 NC_003085.1 + 17627 0.66 0.452489
Target:  5'- -cGCGUGCCGgAGCAc-CugCGCaGGc -3'
miRNA:   3'- cuCGCGCGGCgUCGUuaGugGCGcCC- -5'
11582 3' -60.1 NC_003085.1 + 17961 0.66 0.451525
Target:  5'- gGGGCaccugaaGCGCCgGCAGCGcggGCCGCaGGGc -3'
miRNA:   3'- -CUCG-------CGCGG-CGUCGUuagUGGCG-CCC- -5'
11582 3' -60.1 NC_003085.1 + 48477 0.66 0.446723
Target:  5'- cAGCGcCGCCGaGGCAGacaaugcggcgcugcUCGCCGCGcucaGGa -3'
miRNA:   3'- cUCGC-GCGGCgUCGUU---------------AGUGGCGC----CC- -5'
11582 3' -60.1 NC_003085.1 + 26797 0.66 0.442903
Target:  5'- cAGCaccgGCGCCGC-GCcGUCACCGCc-- -3'
miRNA:   3'- cUCG----CGCGGCGuCGuUAGUGGCGccc -5'
11582 3' -60.1 NC_003085.1 + 25086 0.66 0.442903
Target:  5'- uGGUGC-CCaGCGGCGccuucugCACCGCGGa -3'
miRNA:   3'- cUCGCGcGG-CGUCGUua-----GUGGCGCCc -5'
11582 3' -60.1 NC_003085.1 + 27637 0.66 0.442903
Target:  5'- gGGGCuCGCCGcCAGCGGgaCGCCGCa-- -3'
miRNA:   3'- -CUCGcGCGGC-GUCGUUa-GUGGCGccc -5'
11582 3' -60.1 NC_003085.1 + 8682 0.66 0.442903
Target:  5'- -cGCGCGCgaCGCGuGCGcgCACUuCGGGu -3'
miRNA:   3'- cuCGCGCG--GCGU-CGUuaGUGGcGCCC- -5'
11582 3' -60.1 NC_003085.1 + 11394 0.66 0.433432
Target:  5'- gGAGCGCuaCCGcCGGCugacgcacCGCCGCGGu -3'
miRNA:   3'- -CUCGCGc-GGC-GUCGuua-----GUGGCGCCc -5'
11582 3' -60.1 NC_003085.1 + 46688 0.66 0.433432
Target:  5'- gGAGCGcCGCCGCuGCcugcuUCcgGCCaGCGGa -3'
miRNA:   3'- -CUCGC-GCGGCGuCGuu---AG--UGG-CGCCc -5'
11582 3' -60.1 NC_003085.1 + 42326 0.66 0.433432
Target:  5'- -cGCGCccuGCCGCuggaguagcgcgAGCcGUC-CCGUGGGa -3'
miRNA:   3'- cuCGCG---CGGCG------------UCGuUAGuGGCGCCC- -5'
11582 3' -60.1 NC_003085.1 + 17890 0.66 0.433432
Target:  5'- gGGGCcUGCCGCacaGGCGG-CACCgggGCGGGc -3'
miRNA:   3'- -CUCGcGCGGCG---UCGUUaGUGG---CGCCC- -5'
11582 3' -60.1 NC_003085.1 + 13537 0.66 0.433432
Target:  5'- cGAGcCGCGCCGCG---AUgACCGCGa- -3'
miRNA:   3'- -CUC-GCGCGGCGUcguUAgUGGCGCcc -5'
11582 3' -60.1 NC_003085.1 + 5640 0.66 0.433432
Target:  5'- gGAGCGCucGCCcugugacuuGC-GCGAgCGCCGCGGa -3'
miRNA:   3'- -CUCGCG--CGG---------CGuCGUUaGUGGCGCCc -5'
11582 3' -60.1 NC_003085.1 + 16627 0.66 0.42408
Target:  5'- cGGGCGC-CaCGCAGUuggAGUCGCUGCcuucGGGc -3'
miRNA:   3'- -CUCGCGcG-GCGUCG---UUAGUGGCG----CCC- -5'
11582 3' -60.1 NC_003085.1 + 2967 0.66 0.42408
Target:  5'- aAGCGCGCgGUGGUuucgucgagCGCgCGUGGGa -3'
miRNA:   3'- cUCGCGCGgCGUCGuua------GUG-GCGCCC- -5'
11582 3' -60.1 NC_003085.1 + 38109 0.66 0.41485
Target:  5'- cGGGCGCaUUGaaggggaAGCGGUCGCCGuUGGGg -3'
miRNA:   3'- -CUCGCGcGGCg------UCGUUAGUGGC-GCCC- -5'
11582 3' -60.1 NC_003085.1 + 24506 0.66 0.41485
Target:  5'- cAGCGCgcgguugaugccGCCGUAGguGccCACCGuCGGGu -3'
miRNA:   3'- cUCGCG------------CGGCGUCguUa-GUGGC-GCCC- -5'
11582 3' -60.1 NC_003085.1 + 4091 0.66 0.41485
Target:  5'- gGAGCGC-CCGCAc---UCGCCGCuGGa -3'
miRNA:   3'- -CUCGCGcGGCGUcguuAGUGGCGcCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.