miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11583 5' -60.2 NC_003085.1 + 1786 0.68 0.305256
Target:  5'- aGUGgGACAGGUGGCCcguugGCuGGCCgGGa -3'
miRNA:   3'- cCACgCUGUCCGUCGG-----CGuCUGGgCU- -5'
11583 5' -60.2 NC_003085.1 + 2079 0.67 0.385846
Target:  5'- cGGUgacGCGACgAGcGCAGCCGCcGcACCuCGGc -3'
miRNA:   3'- -CCA---CGCUG-UC-CGUCGGCGuC-UGG-GCU- -5'
11583 5' -60.2 NC_003085.1 + 6774 0.74 0.137142
Target:  5'- gGGUGCGGugcaGGGCGGCCGCAaGCCg-- -3'
miRNA:   3'- -CCACGCUg---UCCGUCGGCGUcUGGgcu -5'
11583 5' -60.2 NC_003085.1 + 9644 0.67 0.377181
Target:  5'- cGGUGCuc--GGCGGCgGCAGGCCa-- -3'
miRNA:   3'- -CCACGcuguCCGUCGgCGUCUGGgcu -5'
11583 5' -60.2 NC_003085.1 + 9741 0.66 0.420865
Target:  5'- cGGUGCucGACGuuGGCGGCCGUcccaaucuucacaGGGCCaccaGAc -3'
miRNA:   3'- -CCACG--CUGU--CCGUCGGCG-------------UCUGGg---CU- -5'
11583 5' -60.2 NC_003085.1 + 10153 0.68 0.331132
Target:  5'- --cGCGGCGGGgAGUaccgcgaggaccggGCGGACCCGGc -3'
miRNA:   3'- ccaCGCUGUCCgUCGg-------------CGUCUGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 10532 0.66 0.402666
Target:  5'- --aGcCGAgGGGCGccaaagcGCCGCGGAgCCGAc -3'
miRNA:   3'- ccaC-GCUgUCCGU-------CGGCGUCUgGGCU- -5'
11583 5' -60.2 NC_003085.1 + 11867 0.71 0.204217
Target:  5'- --gGCGAUgGGGCAGCCGaCAcGCCCGGa -3'
miRNA:   3'- ccaCGCUG-UCCGUCGGC-GUcUGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 12081 0.72 0.183952
Target:  5'- aGGUGCGccagcguCAGGCcgcugcuGCCGCAGGCCaagaGGa -3'
miRNA:   3'- -CCACGCu------GUCCGu------CGGCGUCUGGg---CU- -5'
11583 5' -60.2 NC_003085.1 + 13929 0.66 0.412614
Target:  5'- cGG-GCG-CGGGUuGCCGCAcAUCCGGc -3'
miRNA:   3'- -CCaCGCuGUCCGuCGGCGUcUGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 14278 0.7 0.226389
Target:  5'- -uUGCGcGCGGGCuuGUCGCAG-CCCGGa -3'
miRNA:   3'- ccACGC-UGUCCGu-CGGCGUCuGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 15344 0.71 0.198976
Target:  5'- gGGcGCGGCGGGUgagcucGGCCGCGGcCuCCGGg -3'
miRNA:   3'- -CCaCGCUGUCCG------UCGGCGUCuG-GGCU- -5'
11583 5' -60.2 NC_003085.1 + 15576 0.68 0.328006
Target:  5'- uGGUGCGAuuuCAGGaGGUCGCAaACCCc- -3'
miRNA:   3'- -CCACGCU---GUCCgUCGGCGUcUGGGcu -5'
11583 5' -60.2 NC_003085.1 + 15938 0.69 0.270068
Target:  5'- cGUGUGACAGGCucGGCUGguGGCgCu- -3'
miRNA:   3'- cCACGCUGUCCG--UCGGCguCUGgGcu -5'
11583 5' -60.2 NC_003085.1 + 16551 0.66 0.412614
Target:  5'- --aGCGACgggaAGGCGGCgCGCAGGUCgGAc -3'
miRNA:   3'- ccaCGCUG----UCCGUCG-GCGUCUGGgCU- -5'
11583 5' -60.2 NC_003085.1 + 16737 0.66 0.431084
Target:  5'- aGGU-CGACAGGCAGC-GCccguCCUGAa -3'
miRNA:   3'- -CCAcGCUGUCCGUCGgCGucu-GGGCU- -5'
11583 5' -60.2 NC_003085.1 + 17828 0.7 0.234618
Target:  5'- uGUGCGGCAGGCcccuggggcagugcuGGugcCCGCAGGCgCCGu -3'
miRNA:   3'- cCACGCUGUCCG---------------UC---GGCGUCUG-GGCu -5'
11583 5' -60.2 NC_003085.1 + 19066 0.74 0.126416
Target:  5'- --cGCGGCGGaGCAGgCGcCGGGCCCGGa -3'
miRNA:   3'- ccaCGCUGUC-CGUCgGC-GUCUGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 19158 0.66 0.440499
Target:  5'- gGGUGCGGC--GCAcuCCGUccGGGCCCGGc -3'
miRNA:   3'- -CCACGCUGucCGUc-GGCG--UCUGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 21025 0.66 0.428283
Target:  5'- --cGCGGacGGCAGCCGCAaucucugggcuuccGuCCCGAa -3'
miRNA:   3'- ccaCGCUguCCGUCGGCGU--------------CuGGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.