miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11583 5' -60.2 NC_003085.1 + 34522 0.66 0.410794
Target:  5'- --gGCGACAGcgucagcaacacaGCGGCCGCGagcgccaccagccGGCCCGc -3'
miRNA:   3'- ccaCGCUGUC-------------CGUCGGCGU-------------CUGGGCu -5'
11583 5' -60.2 NC_003085.1 + 15576 0.68 0.328006
Target:  5'- uGGUGCGAuuuCAGGaGGUCGCAaACCCc- -3'
miRNA:   3'- -CCACGCU---GUCCgUCGGCGUcUGGGcu -5'
11583 5' -60.2 NC_003085.1 + 32048 0.68 0.328006
Target:  5'- gGGgcgGCGAguGGCcugggggacAGCaauGCGGACCUGAg -3'
miRNA:   3'- -CCa--CGCUguCCG---------UCGg--CGUCUGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 10153 0.68 0.331132
Target:  5'- --cGCGGCGGGgAGUaccgcgaggaccggGCGGACCCGGc -3'
miRNA:   3'- ccaCGCUGUCCgUCGg-------------CGUCUGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 25156 0.68 0.343856
Target:  5'- cGGUGUGGCcGGCGaCCGU-GGCCUGGu -3'
miRNA:   3'- -CCACGCUGuCCGUcGGCGuCUGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 22779 0.67 0.36025
Target:  5'- cGGUgGCGAC-GGCAGCgGCAacGGCCg-- -3'
miRNA:   3'- -CCA-CGCUGuCCGUCGgCGU--CUGGgcu -5'
11583 5' -60.2 NC_003085.1 + 25557 0.67 0.376322
Target:  5'- --aGCGggcagaaGCAGGCGGgCGCGGACCg-- -3'
miRNA:   3'- ccaCGC-------UGUCCGUCgGCGUCUGGgcu -5'
11583 5' -60.2 NC_003085.1 + 2079 0.67 0.385846
Target:  5'- cGGUgacGCGACgAGcGCAGCCGCcGcACCuCGGc -3'
miRNA:   3'- -CCA---CGCUG-UC-CGUCGGCGuC-UGG-GCU- -5'
11583 5' -60.2 NC_003085.1 + 41561 0.67 0.39464
Target:  5'- --cGCGGC-GGCAGUCGCGGgaGCCaGAg -3'
miRNA:   3'- ccaCGCUGuCCGUCGGCGUC--UGGgCU- -5'
11583 5' -60.2 NC_003085.1 + 36952 0.68 0.305256
Target:  5'- ---uCGACAGGCagGGCCGCGGGgCCa- -3'
miRNA:   3'- ccacGCUGUCCG--UCGGCGUCUgGGcu -5'
11583 5' -60.2 NC_003085.1 + 1786 0.68 0.305256
Target:  5'- aGUGgGACAGGUGGCCcguugGCuGGCCgGGa -3'
miRNA:   3'- cCACgCUGUCCGUCGG-----CGuCUGGgCU- -5'
11583 5' -60.2 NC_003085.1 + 33425 0.69 0.297947
Target:  5'- aGGUGaugGGCAGGCAgGUCaCGGACCgGAu -3'
miRNA:   3'- -CCACg--CUGUCCGU-CGGcGUCUGGgCU- -5'
11583 5' -60.2 NC_003085.1 + 32131 0.8 0.047543
Target:  5'- uGGUGCGACggGGGCGGCUGguGGCgCGGu -3'
miRNA:   3'- -CCACGCUG--UCCGUCGGCguCUGgGCU- -5'
11583 5' -60.2 NC_003085.1 + 19066 0.74 0.126416
Target:  5'- --cGCGGCGGaGCAGgCGcCGGGCCCGGa -3'
miRNA:   3'- ccaCGCUGUC-CGUCgGC-GUCUGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 17828 0.7 0.234618
Target:  5'- uGUGCGGCAGGCcccuggggcagugcuGGugcCCGCAGGCgCCGu -3'
miRNA:   3'- cCACGCUGUCCG---------------UC---GGCGUCUG-GGCu -5'
11583 5' -60.2 NC_003085.1 + 39076 0.69 0.263435
Target:  5'- cGGUGUGAacagccuccgcaUAGGCAacgcucccGCCGCAGuCCUGGc -3'
miRNA:   3'- -CCACGCU------------GUCCGU--------CGGCGUCuGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 15938 0.69 0.270068
Target:  5'- cGUGUGACAGGCucGGCUGguGGCgCu- -3'
miRNA:   3'- cCACGCUGUCCG--UCGGCguCUGgGcu -5'
11583 5' -60.2 NC_003085.1 + 31295 0.69 0.276835
Target:  5'- cGGUaaGCG-CGGGCAGgCGC--GCCCGAc -3'
miRNA:   3'- -CCA--CGCuGUCCGUCgGCGucUGGGCU- -5'
11583 5' -60.2 NC_003085.1 + 46919 0.69 0.295781
Target:  5'- --cGCGGCAGGCGGCacagguucggcgcgCGCAGgGgCCGAc -3'
miRNA:   3'- ccaCGCUGUCCGUCG--------------GCGUC-UgGGCU- -5'
11583 5' -60.2 NC_003085.1 + 22897 0.69 0.297947
Target:  5'- uGGUGCGACuccggcggAGGCuGCCGgGGcgaaGCCCu- -3'
miRNA:   3'- -CCACGCUG--------UCCGuCGGCgUC----UGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.