miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11587 5' -54.7 NC_003085.1 + 27337 0.66 0.716839
Target:  5'- cGGCCAACaucgUCUUCGucgccgucuucaaacAGCGCGUcuggcugguGGAACg -3'
miRNA:   3'- aCUGGUUG----AGAGGU---------------UCGCGCG---------CCUUG- -5'
11587 5' -54.7 NC_003085.1 + 47190 0.66 0.712473
Target:  5'- gGGCCuuGCUC-CCGuccAGCGCGaCGGGc- -3'
miRNA:   3'- aCUGGu-UGAGaGGU---UCGCGC-GCCUug -5'
11587 5' -54.7 NC_003085.1 + 12499 0.66 0.712473
Target:  5'- cGACaCAGC-CUCCucgGAGCGCaGCGGc-- -3'
miRNA:   3'- aCUG-GUUGaGAGG---UUCGCG-CGCCuug -5'
11587 5' -54.7 NC_003085.1 + 995 0.66 0.712473
Target:  5'- cGGCCGACgCUCCAGGacuCGCucuucGUGGAGg -3'
miRNA:   3'- aCUGGUUGaGAGGUUC---GCG-----CGCCUUg -5'
11587 5' -54.7 NC_003085.1 + 5252 0.66 0.712473
Target:  5'- gGuuCGACgCUgCGGGCGCGCGGcaguACg -3'
miRNA:   3'- aCugGUUGaGAgGUUCGCGCGCCu---UG- -5'
11587 5' -54.7 NC_003085.1 + 9525 0.66 0.701503
Target:  5'- cGGCCucgAGCUCgUCCAugAGCGC-CGGcACg -3'
miRNA:   3'- aCUGG---UUGAG-AGGU--UCGCGcGCCuUG- -5'
11587 5' -54.7 NC_003085.1 + 14804 0.66 0.701503
Target:  5'- aGGCCGACaucCUCCGcgaGGCcauCGCGGAGu -3'
miRNA:   3'- aCUGGUUGa--GAGGU---UCGc--GCGCCUUg -5'
11587 5' -54.7 NC_003085.1 + 43643 0.66 0.701503
Target:  5'- aGGCCAuccGC-CUCCAgcAGCcCGgGGGGCg -3'
miRNA:   3'- aCUGGU---UGaGAGGU--UCGcGCgCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 46765 0.66 0.700402
Target:  5'- cUGGCCGgaagcaggcagcgGCggcgCUCCAGGCG-GCGGcgaAGCg -3'
miRNA:   3'- -ACUGGU-------------UGa---GAGGUUCGCgCGCC---UUG- -5'
11587 5' -54.7 NC_003085.1 + 35924 0.66 0.690463
Target:  5'- gGACCAACgacCUCgucuaCGAGCGCcuggcgcCGGAGCu -3'
miRNA:   3'- aCUGGUUGa--GAG-----GUUCGCGc------GCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 40739 0.66 0.690463
Target:  5'- -cGCCGGCggCUCCGcgaGGuUGCGCGGcGCa -3'
miRNA:   3'- acUGGUUGa-GAGGU---UC-GCGCGCCuUG- -5'
11587 5' -54.7 NC_003085.1 + 43136 0.66 0.679364
Target:  5'- cGGCCGugUCUCCAcGCaGCcguuccccaGCGGGccGCu -3'
miRNA:   3'- aCUGGUugAGAGGUuCG-CG---------CGCCU--UG- -5'
11587 5' -54.7 NC_003085.1 + 48954 0.66 0.668219
Target:  5'- gGGCCAAUgCUCC--GUGUGCGGcGACu -3'
miRNA:   3'- aCUGGUUGaGAGGuuCGCGCGCC-UUG- -5'
11587 5' -54.7 NC_003085.1 + 20334 0.67 0.657039
Target:  5'- gGAUgAACUCUgggCCAcggcgccucAGCGCG-GGAGCg -3'
miRNA:   3'- aCUGgUUGAGA---GGU---------UCGCGCgCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 38911 0.67 0.657039
Target:  5'- -cGCCGACUCUCgCAAG-GCGgGGuuGCc -3'
miRNA:   3'- acUGGUUGAGAG-GUUCgCGCgCCu-UG- -5'
11587 5' -54.7 NC_003085.1 + 25963 0.67 0.657039
Target:  5'- -uGCCGAggggaaugccCcCUCCGAGCaacuccGCGCGGAGCu -3'
miRNA:   3'- acUGGUU----------GaGAGGUUCG------CGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 31156 0.67 0.6548
Target:  5'- cGGCCAAUcagUUCCAGGCGauaaaggguaggGCGGAAg -3'
miRNA:   3'- aCUGGUUGa--GAGGUUCGCg-----------CGCCUUg -5'
11587 5' -54.7 NC_003085.1 + 19130 0.67 0.645834
Target:  5'- -cGCCuGCUCcgCCGcGCGCcGCGGAAUc -3'
miRNA:   3'- acUGGuUGAGa-GGUuCGCG-CGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 32535 0.67 0.645834
Target:  5'- cGGCCAguaGCUCaUCCAugaGGC-CGCGGGc- -3'
miRNA:   3'- aCUGGU---UGAG-AGGU---UCGcGCGCCUug -5'
11587 5' -54.7 NC_003085.1 + 41915 0.67 0.645834
Target:  5'- gGACCAGCg--CCGGGCGgGacucauGGGGCg -3'
miRNA:   3'- aCUGGUUGagaGGUUCGCgCg-----CCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.