miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11587 5' -54.7 NC_003085.1 + 8330 0.7 0.431063
Target:  5'- gGGCacuucCUCaUCGGGCGCGUGGAGCg -3'
miRNA:   3'- aCUGguu--GAGaGGUUCGCGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 41434 0.71 0.420377
Target:  5'- -aGCCAuacGCUCUCCGucgaguuGGCGCGCaaggcuGGGGCg -3'
miRNA:   3'- acUGGU---UGAGAGGU-------UCGCGCG------CCUUG- -5'
11587 5' -54.7 NC_003085.1 + 13451 0.71 0.39299
Target:  5'- aUGGCCGccaUCcgCCAAGCuGuCGCGGAGCg -3'
miRNA:   3'- -ACUGGUug-AGa-GGUUCG-C-GCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 2951 0.71 0.383818
Target:  5'- gGACCAGgaCggcgUCAAGCGCGCGGu-- -3'
miRNA:   3'- aCUGGUUgaGa---GGUUCGCGCGCCuug -5'
11587 5' -54.7 NC_003085.1 + 21409 0.72 0.37479
Target:  5'- cGGCCGccuGCUgUCCGAGgcCGCGCaGAACg -3'
miRNA:   3'- aCUGGU---UGAgAGGUUC--GCGCGcCUUG- -5'
11587 5' -54.7 NC_003085.1 + 32939 0.72 0.365906
Target:  5'- cGACCGGCUCaaCAGGCGCGCcu-GCc -3'
miRNA:   3'- aCUGGUUGAGagGUUCGCGCGccuUG- -5'
11587 5' -54.7 NC_003085.1 + 38998 0.72 0.365906
Target:  5'- cGGCCAGC-CgaggggcgCCaAAGCGcCGCGGAGCc -3'
miRNA:   3'- aCUGGUUGaGa-------GG-UUCGC-GCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 39710 0.72 0.365906
Target:  5'- -aGCUcGCUUUCCAAGCGCGCccuGGACu -3'
miRNA:   3'- acUGGuUGAGAGGUUCGCGCGc--CUUG- -5'
11587 5' -54.7 NC_003085.1 + 36941 0.72 0.348579
Target:  5'- -cACCAACUCUCUcgacaggcaGGGC-CGCGGGGCc -3'
miRNA:   3'- acUGGUUGAGAGG---------UUCGcGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 45203 0.72 0.340138
Target:  5'- cGACU-ACUUgaggCCAAGCGCGCGaAGCg -3'
miRNA:   3'- aCUGGuUGAGa---GGUUCGCGCGCcUUG- -5'
11587 5' -54.7 NC_003085.1 + 42037 0.73 0.322897
Target:  5'- -cGCCuuCUCUCCAgccggguAGCaguccGCGCGGAGCg -3'
miRNA:   3'- acUGGuuGAGAGGU-------UCG-----CGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 21882 0.73 0.31571
Target:  5'- aGGCCGugUCccUCCAggacuucgcGGCGCuGCGGAAUg -3'
miRNA:   3'- aCUGGUugAG--AGGU---------UCGCG-CGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 7847 0.73 0.307867
Target:  5'- gGGCCAugUUcgaggagAAGCGCGCGGAACu -3'
miRNA:   3'- aCUGGUugAGagg----UUCGCGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 35260 0.74 0.284503
Target:  5'- gGACCGGCUCUgCAGGCacuucugaaagcuGCcCGGAACa -3'
miRNA:   3'- aCUGGUUGAGAgGUUCG-------------CGcGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 28505 0.75 0.219269
Target:  5'- aGGCCAGCcaccgcaccUCgugCCAGacGCGCGCGGGGCu -3'
miRNA:   3'- aCUGGUUG---------AGa--GGUU--CGCGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 32265 1.09 0.00085
Target:  5'- cUGACCAACUCUCCAAGCGCGCGGAACu -3'
miRNA:   3'- -ACUGGUUGAGAGGUUCGCGCGCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.