miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11588 5' -55.9 NC_003085.1 + 8749 0.66 0.665427
Target:  5'- uUCGuGGCCAAGcGGCUCGucacuaACgaGGCg -3'
miRNA:   3'- cGGCuCCGGUUCuUCGAGC------UGgaCUG- -5'
11588 5' -55.9 NC_003085.1 + 38304 0.66 0.665427
Target:  5'- uGCCuguGAcGGCCAguuGGcgucgugccuaAAGCUCGgGCCUGGCa -3'
miRNA:   3'- -CGG---CU-CCGGU---UC-----------UUCGAGC-UGGACUG- -5'
11588 5' -55.9 NC_003085.1 + 13376 0.66 0.665427
Target:  5'- gGCUGAccacGUCAAGAAGUucgUCGGCCacgGACa -3'
miRNA:   3'- -CGGCUc---CGGUUCUUCG---AGCUGGa--CUG- -5'
11588 5' -55.9 NC_003085.1 + 31622 0.66 0.665427
Target:  5'- gGCCGcgGGGCCu-GAAG-UCGuGCCUGAg -3'
miRNA:   3'- -CGGC--UCCGGuuCUUCgAGC-UGGACUg -5'
11588 5' -55.9 NC_003085.1 + 41411 0.66 0.665427
Target:  5'- uGCCGuagaAGGCCAAGuccccGGGCUuCGGCgUGuCg -3'
miRNA:   3'- -CGGC----UCCGGUUC-----UUCGA-GCUGgACuG- -5'
11588 5' -55.9 NC_003085.1 + 46262 0.66 0.665427
Target:  5'- aCCgGAGGCCGuuGGgcGCUCGAauccuauucgCUGACc -3'
miRNA:   3'- cGG-CUCCGGU--UCuuCGAGCUg---------GACUG- -5'
11588 5' -55.9 NC_003085.1 + 12124 0.66 0.654367
Target:  5'- cCCGAGGCCuucGguGC-CGACC-GGCu -3'
miRNA:   3'- cGGCUCCGGuu-CuuCGaGCUGGaCUG- -5'
11588 5' -55.9 NC_003085.1 + 6348 0.66 0.654367
Target:  5'- uGCCGAGuGCCAAGcuGUgacagCGGugUGACa -3'
miRNA:   3'- -CGGCUC-CGGUUCuuCGa----GCUggACUG- -5'
11588 5' -55.9 NC_003085.1 + 20048 0.66 0.643287
Target:  5'- gGCCGuacuuGGCCAGGAAcuGCUCcaGCaCUGAg -3'
miRNA:   3'- -CGGCu----CCGGUUCUU--CGAGc-UG-GACUg -5'
11588 5' -55.9 NC_003085.1 + 14146 0.66 0.643287
Target:  5'- gGCgGAGuCCGAGgcGCUCGcagaugGCCUcGACg -3'
miRNA:   3'- -CGgCUCcGGUUCuuCGAGC------UGGA-CUG- -5'
11588 5' -55.9 NC_003085.1 + 22726 0.66 0.643287
Target:  5'- gGCgGcuGCCGAGAAGCacUCGGCUccGACa -3'
miRNA:   3'- -CGgCucCGGUUCUUCG--AGCUGGa-CUG- -5'
11588 5' -55.9 NC_003085.1 + 11662 0.66 0.632195
Target:  5'- cGCCGGguGGCCGAGGAGgUgGGgCUGu- -3'
miRNA:   3'- -CGGCU--CCGGUUCUUCgAgCUgGACug -5'
11588 5' -55.9 NC_003085.1 + 33202 0.66 0.631086
Target:  5'- cGCCaGAaggcguuGGCCGAGGcaCUCGGCCgGGCu -3'
miRNA:   3'- -CGG-CU-------CCGGUUCUucGAGCUGGaCUG- -5'
11588 5' -55.9 NC_003085.1 + 42926 0.66 0.610023
Target:  5'- gGCCG-GGCCGGGAGGUggggaGACgaaGACg -3'
miRNA:   3'- -CGGCuCCGGUUCUUCGag---CUGga-CUG- -5'
11588 5' -55.9 NC_003085.1 + 6145 0.66 0.607809
Target:  5'- cCUGGGGCCGcuggugcaucccgguGggGCUCGGgagaaucaggucauCCUGGCg -3'
miRNA:   3'- cGGCUCCGGUu--------------CuuCGAGCU--------------GGACUG- -5'
11588 5' -55.9 NC_003085.1 + 49095 0.67 0.598961
Target:  5'- cCCGAGG---AGggGCcccUCGugCUGACg -3'
miRNA:   3'- cGGCUCCgguUCuuCG---AGCugGACUG- -5'
11588 5' -55.9 NC_003085.1 + 44248 0.67 0.587928
Target:  5'- uGCCG-GGCCGcGucgcGCUCGgacucggccuGCCUGGCu -3'
miRNA:   3'- -CGGCuCCGGUuCuu--CGAGC----------UGGACUG- -5'
11588 5' -55.9 NC_003085.1 + 44335 0.67 0.587928
Target:  5'- aGCCaggcAGGCCGAGuccGAGCgcgacgCGGCCcGGCa -3'
miRNA:   3'- -CGGc---UCCGGUUC---UUCGa-----GCUGGaCUG- -5'
11588 5' -55.9 NC_003085.1 + 40175 0.67 0.576933
Target:  5'- aGCCGAGGUCGGGGGaCUCG--CUGAa -3'
miRNA:   3'- -CGGCUCCGGUUCUUcGAGCugGACUg -5'
11588 5' -55.9 NC_003085.1 + 12187 0.67 0.576933
Target:  5'- aCCGaAGGCCucGGggGCgucCGACUUGcGCg -3'
miRNA:   3'- cGGC-UCCGGu-UCuuCGa--GCUGGAC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.