miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11589 3' -62.7 NC_003085.1 + 42191 0.66 0.315673
Target:  5'- ---aGCCucGGCAUgagGCGCUGGGCg- -3'
miRNA:   3'- caacCGGcuCCGUGa--CGCGGCCCGag -5'
11589 3' -62.7 NC_003085.1 + 44771 0.66 0.308183
Target:  5'- --aGGUaguccgccgaCGAGGCGCaacucgGCGCCGugaaaGGCUCg -3'
miRNA:   3'- caaCCG----------GCUCCGUGa-----CGCGGC-----CCGAG- -5'
11589 3' -62.7 NC_003085.1 + 20172 0.66 0.305962
Target:  5'- -aUGGCCGAGGUguacgcgucguugcGCUGCugGCCgaauucggacuGGGCg- -3'
miRNA:   3'- caACCGGCUCCG--------------UGACG--CGG-----------CCCGag -5'
11589 3' -62.7 NC_003085.1 + 19061 0.66 0.300829
Target:  5'- --cGGCgCGcGGCggaGCagGCGCCGGGCcCg -3'
miRNA:   3'- caaCCG-GCuCCG---UGa-CGCGGCCCGaG- -5'
11589 3' -62.7 NC_003085.1 + 23189 0.66 0.293612
Target:  5'- --aGGCCGAgGGCcaggaccCUGUgaaggcagugGCCGGGCUg -3'
miRNA:   3'- caaCCGGCU-CCGu------GACG----------CGGCCCGAg -5'
11589 3' -62.7 NC_003085.1 + 29424 0.66 0.286531
Target:  5'- -aUGGCgGAGGCucagGCGCUGcaaGGCUUc -3'
miRNA:   3'- caACCGgCUCCGuga-CGCGGC---CCGAG- -5'
11589 3' -62.7 NC_003085.1 + 10006 0.66 0.279584
Target:  5'- aGggGGCgGAGGUAUggGUGgCGGGCa- -3'
miRNA:   3'- -CaaCCGgCUCCGUGa-CGCgGCCCGag -5'
11589 3' -62.7 NC_003085.1 + 1064 0.66 0.279584
Target:  5'- ---cGCCGAGGCagacaaugcggcGCUGCucGCCGcGCUCa -3'
miRNA:   3'- caacCGGCUCCG------------UGACG--CGGCcCGAG- -5'
11589 3' -62.7 NC_003085.1 + 43797 0.66 0.279584
Target:  5'- -aUGGCCGGaaucucuccgcGGCGCUcGCGCaagucacaGGGCg- -3'
miRNA:   3'- caACCGGCU-----------CCGUGA-CGCGg-------CCCGag -5'
11589 3' -62.7 NC_003085.1 + 22627 0.66 0.272773
Target:  5'- -gUGGCgGGGGCACacgccugGCGCgcagGGGCaUCa -3'
miRNA:   3'- caACCGgCUCCGUGa------CGCGg---CCCG-AG- -5'
11589 3' -62.7 NC_003085.1 + 11610 0.66 0.272773
Target:  5'- --cGGCgCGaAGGgGCUGUGCagGGGCUg -3'
miRNA:   3'- caaCCG-GC-UCCgUGACGCGg-CCCGAg -5'
11589 3' -62.7 NC_003085.1 + 40783 0.67 0.266095
Target:  5'- cGUUGGCgGAcGGCACcccgGCGCCcaaGGC-Ca -3'
miRNA:   3'- -CAACCGgCU-CCGUGa---CGCGGc--CCGaG- -5'
11589 3' -62.7 NC_003085.1 + 4105 0.67 0.266095
Target:  5'- ---cGCCGcuggaguuGGGCGCcGCGCUGGGaCUCc -3'
miRNA:   3'- caacCGGC--------UCCGUGaCGCGGCCC-GAG- -5'
11589 3' -62.7 NC_003085.1 + 19216 0.67 0.259551
Target:  5'- cGggGGCUGggcgccgcgcaAGGC-CUGCGCCaGGGC-Ca -3'
miRNA:   3'- -CaaCCGGC-----------UCCGuGACGCGG-CCCGaG- -5'
11589 3' -62.7 NC_003085.1 + 45890 0.67 0.259551
Target:  5'- --cGGCagCGAGGCGCgcuUGCGCCcGGC-Cg -3'
miRNA:   3'- caaCCG--GCUCCGUG---ACGCGGcCCGaG- -5'
11589 3' -62.7 NC_003085.1 + 38153 0.67 0.253138
Target:  5'- cGUUGGUgGuGGCGCUcccCGCCGcGGCg- -3'
miRNA:   3'- -CAACCGgCuCCGUGAc--GCGGC-CCGag -5'
11589 3' -62.7 NC_003085.1 + 16207 0.67 0.253138
Target:  5'- --cGcGCgCGAGG-ACUGaauacuGCCGGGCUCa -3'
miRNA:   3'- caaC-CG-GCUCCgUGACg-----CGGCCCGAG- -5'
11589 3' -62.7 NC_003085.1 + 44643 0.67 0.240703
Target:  5'- gGUUGGCUcaGAGuGUcg-GUGCCGGGCUUu -3'
miRNA:   3'- -CAACCGG--CUC-CGugaCGCGGCCCGAG- -5'
11589 3' -62.7 NC_003085.1 + 42897 0.67 0.234679
Target:  5'- --aGGCCGAGGUcCUGCGCgUGGaUUCc -3'
miRNA:   3'- caaCCGGCUCCGuGACGCG-GCCcGAG- -5'
11589 3' -62.7 NC_003085.1 + 26338 0.67 0.234679
Target:  5'- -cUGcGCCGucuugcGGUGCUGCGCCGccucGCUCa -3'
miRNA:   3'- caAC-CGGCu-----CCGUGACGCGGCc---CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.