Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11589 | 3' | -62.7 | NC_003085.1 | + | 8657 | 0.68 | 0.211841 |
Target: 5'- --cGGCCGGGacGCGCguggccuuggGCGCCGGGgUg -3' miRNA: 3'- caaCCGGCUC--CGUGa---------CGCGGCCCgAg -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 26087 | 0.68 | 0.206438 |
Target: 5'- aGUUGGuuGGGGUcgaagugcugggGCUGCGCCucGGCg- -3' miRNA: 3'- -CAACCggCUCCG------------UGACGCGGc-CCGag -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 30115 | 0.68 | 0.201155 |
Target: 5'- -aUGGCCuuAGGCACc-UGCCGGGcCUCg -3' miRNA: 3'- caACCGGc-UCCGUGacGCGGCCC-GAG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 13561 | 0.68 | 0.201155 |
Target: 5'- -cUGGCCGuGGCAUgGCcCUGGGaCUCc -3' miRNA: 3'- caACCGGCuCCGUGaCGcGGCCC-GAG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 47974 | 0.69 | 0.186006 |
Target: 5'- --cGGCCGAGGCug-GCGacggugaCGGGCg- -3' miRNA: 3'- caaCCGGCUCCGugaCGCg------GCCCGag -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 16207 | 0.67 | 0.253138 |
Target: 5'- --cGcGCgCGAGG-ACUGaauacuGCCGGGCUCa -3' miRNA: 3'- caaC-CG-GCUCCgUGACg-----CGGCCCGAG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 45890 | 0.67 | 0.259551 |
Target: 5'- --cGGCagCGAGGCGCgcuUGCGCCcGGC-Cg -3' miRNA: 3'- caaCCG--GCUCCGUG---ACGCGGcCCGaG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 19216 | 0.67 | 0.259551 |
Target: 5'- cGggGGCUGggcgccgcgcaAGGC-CUGCGCCaGGGC-Ca -3' miRNA: 3'- -CaaCCGGC-----------UCCGuGACGCGG-CCCGaG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 22627 | 0.66 | 0.272773 |
Target: 5'- -gUGGCgGGGGCACacgccugGCGCgcagGGGCaUCa -3' miRNA: 3'- caACCGgCUCCGUGa------CGCGg---CCCG-AG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 10006 | 0.66 | 0.279584 |
Target: 5'- aGggGGCgGAGGUAUggGUGgCGGGCa- -3' miRNA: 3'- -CaaCCGgCUCCGUGa-CGCgGCCCGag -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 1064 | 0.66 | 0.279584 |
Target: 5'- ---cGCCGAGGCagacaaugcggcGCUGCucGCCGcGCUCa -3' miRNA: 3'- caacCGGCUCCG------------UGACG--CGGCcCGAG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 43797 | 0.66 | 0.279584 |
Target: 5'- -aUGGCCGGaaucucuccgcGGCGCUcGCGCaagucacaGGGCg- -3' miRNA: 3'- caACCGGCU-----------CCGUGA-CGCGg-------CCCGag -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 20172 | 0.66 | 0.305962 |
Target: 5'- -aUGGCCGAGGUguacgcgucguugcGCUGCugGCCgaauucggacuGGGCg- -3' miRNA: 3'- caACCGGCUCCG--------------UGACG--CGG-----------CCCGag -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 27343 | 0.71 | 0.131466 |
Target: 5'- --cGGCUGcuGCg--GCGCCGGGCUCu -3' miRNA: 3'- caaCCGGCucCGugaCGCGGCCCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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