Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11594 | 3' | -55.6 | NC_003085.1 | + | 36405 | 1.11 | 0.000762 |
Target: 5'- gACGACGGAAAGUCACCCUCCGCACGGa -3' miRNA: 3'- -UGCUGCCUUUCAGUGGGAGGCGUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 12119 | 0.75 | 0.243693 |
Target: 5'- cACGACGGaAAAGUCACcggugccugcuCCUCCGUACc- -3' miRNA: 3'- -UGCUGCC-UUUCAGUG-----------GGAGGCGUGcc -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 5280 | 0.73 | 0.316318 |
Target: 5'- cGCGACGGGAcgcccuggagaccgaAGUCGccuCCCUCCGCgaGCGc -3' miRNA: 3'- -UGCUGCCUU---------------UCAGU---GGGAGGCG--UGCc -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 31318 | 0.72 | 0.345002 |
Target: 5'- cCGccuCGGGuccGUCACCUugUCCGCGCGGa -3' miRNA: 3'- uGCu--GCCUuu-CAGUGGG--AGGCGUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 13019 | 0.71 | 0.396833 |
Target: 5'- cAUGA-GGc--GcCGCCCUCCGCACGGu -3' miRNA: 3'- -UGCUgCCuuuCaGUGGGAGGCGUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 42690 | 0.71 | 0.415189 |
Target: 5'- --aGCGGAAGGgcucUCGCCgUCCGcCACGGc -3' miRNA: 3'- ugcUGCCUUUC----AGUGGgAGGC-GUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 37742 | 0.71 | 0.415189 |
Target: 5'- aGCGuCGGGGAGUCuguacaaCUUCCGCGCuGGu -3' miRNA: 3'- -UGCuGCCUUUCAGug-----GGAGGCGUG-CC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 14711 | 0.7 | 0.463265 |
Target: 5'- -aGugGGAAcacccGUCA-CCUCCGCGCGa -3' miRNA: 3'- ugCugCCUUu----CAGUgGGAGGCGUGCc -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 38248 | 0.7 | 0.483298 |
Target: 5'- uCGGCGGu-GGcCACCUacuUCCGCGCGa -3' miRNA: 3'- uGCUGCCuuUCaGUGGG---AGGCGUGCc -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 10153 | 0.69 | 0.49347 |
Target: 5'- cGCGGCGGGGAG-UACCgCgaggaCCGgGCGGa -3' miRNA: 3'- -UGCUGCCUUUCaGUGG-Ga----GGCgUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 27555 | 0.69 | 0.503739 |
Target: 5'- gGCGGCGGuGAcGUCGCCaUCUggcaggGCACGGa -3' miRNA: 3'- -UGCUGCCuUU-CAGUGGgAGG------CGUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 48417 | 0.69 | 0.524546 |
Target: 5'- uCGGCGGcgcuGG-CuuCCUCCGCAUGGa -3' miRNA: 3'- uGCUGCCuu--UCaGugGGAGGCGUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 9770 | 0.69 | 0.535072 |
Target: 5'- aACGGCGGAGAGaCGagCCUCCaGCGCc- -3' miRNA: 3'- -UGCUGCCUUUCaGUg-GGAGG-CGUGcc -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 22496 | 0.69 | 0.543546 |
Target: 5'- gGCGACGGAcGG-CACCgacaucggaagCCGCACGa -3' miRNA: 3'- -UGCUGCCUuUCaGUGGga---------GGCGUGCc -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 39875 | 0.68 | 0.556338 |
Target: 5'- gAUGGCGGAGAGaCGCCggugCUCgGCgGCGGc -3' miRNA: 3'- -UGCUGCCUUUCaGUGG----GAGgCG-UGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 24961 | 0.68 | 0.556338 |
Target: 5'- gACGACGGAGuacGGcggCAUCCUgCCGCAgaacaucuCGGa -3' miRNA: 3'- -UGCUGCCUU---UCa--GUGGGA-GGCGU--------GCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 7303 | 0.68 | 0.567063 |
Target: 5'- uCGACGGGAAGUCuCCgaCgGCcaucGCGGa -3' miRNA: 3'- uGCUGCCUUUCAGuGGgaGgCG----UGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 23611 | 0.68 | 0.570291 |
Target: 5'- uCGACGGugacgauuuuGAAGUaggccagguucuccaCCUCCGCGCGGg -3' miRNA: 3'- uGCUGCC----------UUUCAgug------------GGAGGCGUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 5396 | 0.68 | 0.57784 |
Target: 5'- gGCGAaccgcUGGAGGGUgGCCCUUCGagcgcucuugaGCGGa -3' miRNA: 3'- -UGCU-----GCCUUUCAgUGGGAGGCg----------UGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 26542 | 0.68 | 0.57784 |
Target: 5'- cGCGGCcucGGAGGGcuUCGCCCcggcagccUCCGC-CGGa -3' miRNA: 3'- -UGCUG---CCUUUC--AGUGGG--------AGGCGuGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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