Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11594 | 3' | -55.6 | NC_003085.1 | + | 36405 | 1.11 | 0.000762 |
Target: 5'- gACGACGGAAAGUCACCCUCCGCACGGa -3' miRNA: 3'- -UGCUGCCUUUCAGUGGGAGGCGUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 19066 | 0.67 | 0.654035 |
Target: 5'- cGCGGCGGAGcAGgCGCCgggcCCGgACGGa -3' miRNA: 3'- -UGCUGCCUU-UCaGUGGga--GGCgUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 43130 | 0.67 | 0.664918 |
Target: 5'- uUGGCGuAGAGcgCGCCCaugCUGCGCGGu -3' miRNA: 3'- uGCUGCcUUUCa-GUGGGa--GGCGUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 18277 | 0.66 | 0.67577 |
Target: 5'- gGCGACaGGGAAGaaGCCa-CCGgGCGGu -3' miRNA: 3'- -UGCUG-CCUUUCagUGGgaGGCgUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 12538 | 0.66 | 0.686582 |
Target: 5'- cGCGGCaGAGGGaugcCACCCgccgCCGCugGc -3' miRNA: 3'- -UGCUGcCUUUCa---GUGGGa---GGCGugCc -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 18725 | 0.66 | 0.697343 |
Target: 5'- -aGACGGGAcG-CGCCUUCCuGCGCa- -3' miRNA: 3'- ugCUGCCUUuCaGUGGGAGG-CGUGcc -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 22907 | 0.66 | 0.711237 |
Target: 5'- cCGGCGGAGgcugccgGGgcgaaGCCCUCCgaggccgcgucgacgGCGCGGc -3' miRNA: 3'- uGCUGCCUU-------UCag---UGGGAGG---------------CGUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 14786 | 0.66 | 0.718667 |
Target: 5'- aACGGCGcGGGGUgcaaaaggccgaCAUCCUCCGCgaggccaucGCGGa -3' miRNA: 3'- -UGCUGCcUUUCA------------GUGGGAGGCG---------UGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 25965 | 0.66 | 0.718667 |
Target: 5'- cCGAgGGGAA--UGCCCccuccgagcaacUCCGCGCGGa -3' miRNA: 3'- uGCUgCCUUUcaGUGGG------------AGGCGUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 37145 | 0.67 | 0.63222 |
Target: 5'- gGCGACGGcgGG-CACCCUggCgGUgACGGg -3' miRNA: 3'- -UGCUGCCuuUCaGUGGGA--GgCG-UGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 2992 | 0.68 | 0.588662 |
Target: 5'- cGCGugGGAAc--CGCUCcCCGCugGGc -3' miRNA: 3'- -UGCugCCUUucaGUGGGaGGCGugCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 1674 | 0.68 | 0.588662 |
Target: 5'- cGCGGCGac--GUCACCCUCuaccacugcaCGCACGa -3' miRNA: 3'- -UGCUGCcuuuCAGUGGGAG----------GCGUGCc -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 37742 | 0.71 | 0.415189 |
Target: 5'- aGCGuCGGGGAGUCuguacaaCUUCCGCGCuGGu -3' miRNA: 3'- -UGCuGCCUUUCAGug-----GGAGGCGUG-CC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 38248 | 0.7 | 0.483298 |
Target: 5'- uCGGCGGu-GGcCACCUacuUCCGCGCGa -3' miRNA: 3'- uGCUGCCuuUCaGUGGG---AGGCGUGCc -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 10153 | 0.69 | 0.49347 |
Target: 5'- cGCGGCGGGGAG-UACCgCgaggaCCGgGCGGa -3' miRNA: 3'- -UGCUGCCUUUCaGUGG-Ga----GGCgUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 27555 | 0.69 | 0.503739 |
Target: 5'- gGCGGCGGuGAcGUCGCCaUCUggcaggGCACGGa -3' miRNA: 3'- -UGCUGCCuUU-CAGUGGgAGG------CGUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 48417 | 0.69 | 0.524546 |
Target: 5'- uCGGCGGcgcuGG-CuuCCUCCGCAUGGa -3' miRNA: 3'- uGCUGCCuu--UCaGugGGAGGCGUGCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 22496 | 0.69 | 0.543546 |
Target: 5'- gGCGACGGAcGG-CACCgacaucggaagCCGCACGa -3' miRNA: 3'- -UGCUGCCUuUCaGUGGga---------GGCGUGCc -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 24961 | 0.68 | 0.556338 |
Target: 5'- gACGACGGAGuacGGcggCAUCCUgCCGCAgaacaucuCGGa -3' miRNA: 3'- -UGCUGCCUU---UCa--GUGGGA-GGCGU--------GCC- -5' |
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11594 | 3' | -55.6 | NC_003085.1 | + | 7303 | 0.68 | 0.567063 |
Target: 5'- uCGACGGGAAGUCuCCgaCgGCcaucGCGGa -3' miRNA: 3'- uGCUGCCUUUCAGuGGgaGgCG----UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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