Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11595 | 3' | -55.7 | NC_003085.1 | + | 42056 | 0.67 | 0.604791 |
Target: 5'- aGGGCCccagucgGACUcGUGCc-AGUUCACGCg -3' miRNA: 3'- gCCCGGa------CUGA-CGUGuaUCAGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 42395 | 0.66 | 0.68209 |
Target: 5'- gGGGCC--ACUGaagaGCAUGGgccuUUCGCGCg -3' miRNA: 3'- gCCCGGacUGACg---UGUAUC----AGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 46038 | 0.68 | 0.539297 |
Target: 5'- uGGGCU---CUGCGCA---UCCGCGCg -3' miRNA: 3'- gCCCGGacuGACGUGUaucAGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 46950 | 0.68 | 0.538223 |
Target: 5'- gGGGCC-GACgcggGCACAccGUCCgucagccACGCc -3' miRNA: 3'- gCCCGGaCUGa---CGUGUauCAGG-------UGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 46995 | 0.68 | 0.536077 |
Target: 5'- -uGGCCacacuaugcgucagUGGCUGaCGCAUAGUCaagGCGCu -3' miRNA: 3'- gcCCGG--------------ACUGAC-GUGUAUCAGg--UGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 47409 | 0.68 | 0.547914 |
Target: 5'- cCGGGCCuuggcauccauggUGACggGCACuUGGUggaacacaucgcgCCACGCc -3' miRNA: 3'- -GCCCGG-------------ACUGa-CGUGuAUCA-------------GGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 47434 | 0.72 | 0.313692 |
Target: 5'- gCGGGCCaaacugcuccaUGucCUGCGCGUcgaagucgaaccGGUCCGCGUa -3' miRNA: 3'- -GCCCGG-----------ACu-GACGUGUA------------UCAGGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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