Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11595 | 3' | -55.7 | NC_003085.1 | + | 20760 | 0.67 | 0.615841 |
Target: 5'- aGGGCCa-GC-GCGCAgc-UCCGCGCg -3' miRNA: 3'- gCCCGGacUGaCGUGUaucAGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 40507 | 0.66 | 0.637973 |
Target: 5'- cCGcGGCCcuUGGCccaGCGCAgguUGG-CCACGCg -3' miRNA: 3'- -GC-CCGG--ACUGa--CGUGU---AUCaGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 8884 | 0.66 | 0.649037 |
Target: 5'- -cGGCaauGCUGCACuuggGGUCCACcGCg -3' miRNA: 3'- gcCCGgacUGACGUGua--UCAGGUG-CG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 38105 | 0.66 | 0.649037 |
Target: 5'- aCGGuGuCCUGGCUGaCGCcgAGUUCuucCGCc -3' miRNA: 3'- -GCC-C-GGACUGAC-GUGuaUCAGGu--GCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 30067 | 0.66 | 0.68209 |
Target: 5'- uGGGCCUuGCUgggGUACc-GGcCCACGCg -3' miRNA: 3'- gCCCGGAcUGA---CGUGuaUCaGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 42395 | 0.66 | 0.68209 |
Target: 5'- gGGGCC--ACUGaagaGCAUGGgccuUUCGCGCg -3' miRNA: 3'- gCCCGGacUGACg---UGUAUC----AGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 19415 | 0.7 | 0.436521 |
Target: 5'- uGGGCCUG-CUGCAacuuGUgCugGCc -3' miRNA: 3'- gCCCGGACuGACGUguauCAgGugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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