Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11596 | 3' | -56.7 | NC_003085.1 | + | 37247 | 1.1 | 0.000472 |
Target: 5'- gCUCAAGGCAGGCGUCGCAGACCACACg -3' miRNA: 3'- -GAGUUCCGUCCGCAGCGUCUGGUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 36675 | 0.72 | 0.272416 |
Target: 5'- uCUCAcauAGGCGGGCGcCGgauucCGGGCCugACu -3' miRNA: 3'- -GAGU---UCCGUCCGCaGC-----GUCUGGugUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 23362 | 0.7 | 0.349458 |
Target: 5'- aUgGAGGCAGccGUGUCcCAGGCCAUGCg -3' miRNA: 3'- gAgUUCCGUC--CGCAGcGUCUGGUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 13360 | 0.7 | 0.349458 |
Target: 5'- -gCGAGGCAGGagagGUgGCuGACCACGu -3' miRNA: 3'- gaGUUCCGUCCg---CAgCGuCUGGUGUg -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 47761 | 0.7 | 0.366614 |
Target: 5'- uUCGAcGGcCAGGCGcUCGCAGGCgACu- -3' miRNA: 3'- gAGUU-CC-GUCCGC-AGCGUCUGgUGug -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 25254 | 0.7 | 0.375407 |
Target: 5'- gCUCcgcGGCGGGCGUCGUcGuCgGCGCg -3' miRNA: 3'- -GAGuu-CCGUCCGCAGCGuCuGgUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 42724 | 0.69 | 0.384342 |
Target: 5'- cCUCAGGcGUGGGCGUCG-GGGCgAUGCg -3' miRNA: 3'- -GAGUUC-CGUCCGCAGCgUCUGgUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 25558 | 0.69 | 0.393416 |
Target: 5'- -gCGGGcagaaGCAGGCGggCGCGGACCGCc- -3' miRNA: 3'- gaGUUC-----CGUCCGCa-GCGUCUGGUGug -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 40557 | 0.69 | 0.393416 |
Target: 5'- gUCGAGGCgcaAGGCcuugGUgGCGGugCGCAUg -3' miRNA: 3'- gAGUUCCG---UCCG----CAgCGUCugGUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 32430 | 0.69 | 0.402629 |
Target: 5'- -cCAAGGaGGGCGUCGUuGGACCgaACGCc -3' miRNA: 3'- gaGUUCCgUCCGCAGCG-UCUGG--UGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 3931 | 0.69 | 0.421457 |
Target: 5'- ---cAGGCucGCGUCGCGGGCCuGCAa -3' miRNA: 3'- gaguUCCGucCGCAGCGUCUGG-UGUg -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 24292 | 0.68 | 0.431069 |
Target: 5'- gCUCGAGGCGcGGaugaauGUCGCcgAGGCCAC-Ca -3' miRNA: 3'- -GAGUUCCGU-CCg-----CAGCG--UCUGGUGuG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 12030 | 0.68 | 0.450669 |
Target: 5'- -gCGGGGUuGGCGcUCGCuaGCCGCACu -3' miRNA: 3'- gaGUUCCGuCCGC-AGCGucUGGUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 10129 | 0.68 | 0.460651 |
Target: 5'- cCUCAc-GCAGGUaUC-CAGGCCGCGCa -3' miRNA: 3'- -GAGUucCGUCCGcAGcGUCUGGUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 31131 | 0.68 | 0.467708 |
Target: 5'- -gUAAGGCAGcGCGUUGCGGcugcccuucggacgGCCAgCGCc -3' miRNA: 3'- gaGUUCCGUC-CGCAGCGUC--------------UGGU-GUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 22620 | 0.68 | 0.47075 |
Target: 5'- aUCGAGGguGGCGgggGCAcacGCCugGCg -3' miRNA: 3'- gAGUUCCguCCGCag-CGUc--UGGugUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 649 | 0.68 | 0.477884 |
Target: 5'- gUCGAGGCGcucgagcaccgcccGGaCGUCGCcGGCCACc- -3' miRNA: 3'- gAGUUCCGU--------------CC-GCAGCGuCUGGUGug -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 14368 | 0.67 | 0.491275 |
Target: 5'- aCUCAacGGGguGaCGUCGCAGAUgGCcCg -3' miRNA: 3'- -GAGU--UCCguCcGCAGCGUCUGgUGuG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 7464 | 0.67 | 0.501691 |
Target: 5'- ----cGGUGGGCGUCGCGccUCACGCu -3' miRNA: 3'- gaguuCCGUCCGCAGCGUcuGGUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 26082 | 0.67 | 0.501691 |
Target: 5'- -gCAAGGCAcGGUGaCGCAuGGCCugggACACg -3' miRNA: 3'- gaGUUCCGU-CCGCaGCGU-CUGG----UGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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