Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11596 | 3' | -56.7 | NC_003085.1 | + | 37247 | 1.1 | 0.000472 |
Target: 5'- gCUCAAGGCAGGCGUCGCAGACCACACg -3' miRNA: 3'- -GAGUUCCGUCCGCAGCGUCUGGUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 23642 | 0.67 | 0.501691 |
Target: 5'- uUCA--GCAGcGCGa-GCAGGCCGCGCa -3' miRNA: 3'- gAGUucCGUC-CGCagCGUCUGGUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 7464 | 0.67 | 0.501691 |
Target: 5'- ----cGGUGGGCGUCGCGccUCACGCu -3' miRNA: 3'- gaguuCCGUCCGCAGCGUcuGGUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 39593 | 0.67 | 0.512204 |
Target: 5'- -gCAAGcuGgAGcGCGUCGCGGAgCGCACc -3' miRNA: 3'- gaGUUC--CgUC-CGCAGCGUCUgGUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 7326 | 0.67 | 0.533493 |
Target: 5'- aUCGcGG-AGGCGgcugaggaCGCGGGCUACACg -3' miRNA: 3'- gAGUuCCgUCCGCa-------GCGUCUGGUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 41259 | 0.66 | 0.555089 |
Target: 5'- -gCGcGGCAGGCuggacUgGCGGGCCAUGCa -3' miRNA: 3'- gaGUuCCGUCCGc----AgCGUCUGGUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 9683 | 0.66 | 0.555089 |
Target: 5'- gUCGAgcaccGGCuGGCGUCccuGCAGACUggaGCGCc -3' miRNA: 3'- gAGUU-----CCGuCCGCAG---CGUCUGG---UGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 47372 | 0.66 | 0.565983 |
Target: 5'- gUCGAGGaugAGuGCGUCGUAGccuUCGCGCu -3' miRNA: 3'- gAGUUCCg--UC-CGCAGCGUCu--GGUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 36143 | 0.66 | 0.598961 |
Target: 5'- -aCAuGGCGGGCucgcugaugaugGUCGCcGACCGCuCg -3' miRNA: 3'- gaGUuCCGUCCG------------CAGCGuCUGGUGuG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 26082 | 0.67 | 0.501691 |
Target: 5'- -gCAAGGCAcGGUGaCGCAuGGCCugggACACg -3' miRNA: 3'- gaGUUCCGU-CCGCaGCGU-CUGG----UGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 14368 | 0.67 | 0.491275 |
Target: 5'- aCUCAacGGGguGaCGUCGCAGAUgGCcCg -3' miRNA: 3'- -GAGU--UCCguCcGCAGCGUCUGgUGuG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 649 | 0.68 | 0.477884 |
Target: 5'- gUCGAGGCGcucgagcaccgcccGGaCGUCGCcGGCCACc- -3' miRNA: 3'- gAGUUCCGU--------------CC-GCAGCGuCUGGUGug -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 36675 | 0.72 | 0.272416 |
Target: 5'- uCUCAcauAGGCGGGCGcCGgauucCGGGCCugACu -3' miRNA: 3'- -GAGU---UCCGUCCGCaGC-----GUCUGGugUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 13360 | 0.7 | 0.349458 |
Target: 5'- -gCGAGGCAGGagagGUgGCuGACCACGu -3' miRNA: 3'- gaGUUCCGUCCg---CAgCGuCUGGUGUg -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 47761 | 0.7 | 0.366614 |
Target: 5'- uUCGAcGGcCAGGCGcUCGCAGGCgACu- -3' miRNA: 3'- gAGUU-CC-GUCCGC-AGCGUCUGgUGug -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 25254 | 0.7 | 0.375407 |
Target: 5'- gCUCcgcGGCGGGCGUCGUcGuCgGCGCg -3' miRNA: 3'- -GAGuu-CCGUCCGCAGCGuCuGgUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 42724 | 0.69 | 0.384342 |
Target: 5'- cCUCAGGcGUGGGCGUCG-GGGCgAUGCg -3' miRNA: 3'- -GAGUUC-CGUCCGCAGCgUCUGgUGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 25558 | 0.69 | 0.393416 |
Target: 5'- -gCGGGcagaaGCAGGCGggCGCGGACCGCc- -3' miRNA: 3'- gaGUUC-----CGUCCGCa-GCGUCUGGUGug -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 32430 | 0.69 | 0.402629 |
Target: 5'- -cCAAGGaGGGCGUCGUuGGACCgaACGCc -3' miRNA: 3'- gaGUUCCgUCCGCAGCG-UCUGG--UGUG- -5' |
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11596 | 3' | -56.7 | NC_003085.1 | + | 24292 | 0.68 | 0.431069 |
Target: 5'- gCUCGAGGCGcGGaugaauGUCGCcgAGGCCAC-Ca -3' miRNA: 3'- -GAGUUCCGU-CCg-----CAGCG--UCUGGUGuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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