Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11597 | 3' | -55.3 | NC_003085.1 | + | 22944 | 0.66 | 0.687689 |
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Target: 5'- cGUCGACgGCgcgGCGAagcCGGAcgagccGgCCCAGUc -3' miRNA: 3'- -CAGCUGaCGa--UGCU---GCCU------UgGGGUCG- -5' |
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| 11597 | 3' | -55.3 | NC_003085.1 | + | 34420 | 0.66 | 0.687689 |
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Target: 5'- uUUGGCccuggGCUGCGGCuuGGGccGgCCCAGCg -3' miRNA: 3'- cAGCUGa----CGAUGCUG--CCU--UgGGGUCG- -5' |
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| 11597 | 3' | -55.3 | NC_003085.1 | + | 41030 | 0.66 | 0.687689 |
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Target: 5'- -aCGGCUGCUGCuGGCcGAGCaccugaaacugCCAGCg -3' miRNA: 3'- caGCUGACGAUG-CUGcCUUGg----------GGUCG- -5' |
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| 11597 | 3' | -55.3 | NC_003085.1 | + | 20425 | 0.66 | 0.687689 |
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Target: 5'- -aCuGCUGCUggACGGCguuGGAGgcaucCCCCAGCg -3' miRNA: 3'- caGcUGACGA--UGCUG---CCUU-----GGGGUCG- -5' |
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| 11597 | 3' | -55.3 | NC_003085.1 | + | 1345 | 0.66 | 0.698573 |
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Target: 5'- --aGACUGCUgGCGACGuuGCCgCCAaGUa -3' miRNA: 3'- cagCUGACGA-UGCUGCcuUGG-GGU-CG- -5' |
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| 11597 | 3' | -55.3 | NC_003085.1 | + | 4114 | 0.66 | 0.709392 |
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Target: 5'- aGUUGGgcGCcGCGcUGGGACUCCAGCg -3' miRNA: 3'- -CAGCUgaCGaUGCuGCCUUGGGGUCG- -5' |
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| 11597 | 3' | -55.3 | NC_003085.1 | + | 41143 | 0.66 | 0.713699 |
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Target: 5'- -cCGuACUGCUggccggaugccuccaACGGCuaccugggcaaGGGGCUCCAGCg -3' miRNA: 3'- caGC-UGACGA---------------UGCUG-----------CCUUGGGGUCG- -5' |
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| 11597 | 3' | -55.3 | NC_003085.1 | + | 601 | 0.66 | 0.717993 |
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Target: 5'- -gCGACUGCaagcccgucgcggccUACGGCGGGuugugcugcgccaagGCgCUCGGCg -3' miRNA: 3'- caGCUGACG---------------AUGCUGCCU---------------UG-GGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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